LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g0839	ATGGAGTCTCCCTCCTTTTCATCCTCCTCCTCCGATTCCGGTACCATCGCCACCAGTGATCAGAATGCGGAGCGAAGTCGGAGAAGTGGCGAGGCCCATGAAGCTGTGACCTTTGAGCAATCGCGTCGGTGGCATGATGTTTTCTGGTCTGGCATATTTATAATTCATTTGCTTTTTCTGGCACTCATTTTGGGGGTTCTCGGCCTCGATAGGTTCCAGGAAAGGGATAGACTTAAGATTGGTATCTACACCGGACCACTTCACCGTCGTGAACATGGATTCACCGAGGATTACTGGCCGCTTTATGCTGTTGCTAGTGGAGTTGGAACTGTTCTCGGATTGAGTTGGCTGCTGCTGTTGGGTTATGGGGCAAACCAAATGATGAAGGTGTCTGTTCACATACTGACCACTTATCTTGCTGTGATCAGTGTTTTGTGTTTCTGGGCTGAACAACTTTTCTGGGGGGTTGTTTTTGCCACCGGAGCAGCCCTGCAATTCTTGTACGTGATATCGGTCATCGACAGACTTCCGTTTACCATGCTGGTTCTGCAAAAAGCTATGAGGATGGTTTGCAGTCTTCCTGAGGTTAAGAGAGTGGCATATGCATTTATGCTTGTGGTGCTTTTATGGATGGCCTTATGGTCTTTTGGTGCATCAGGCGTTGTGGCTTCAAGCATGTTTGATGTTGGATGCTGGTGGGTTCTTTTGGTGAGCCAGCAAGTTGTGCTCTTAATTCCATCTGTTCCTGTTGGGAGTTGGATTTTCAGTGTCAGTCTATTCTGGACAGGTGCTGTACTCTGTAATACTGTACATGTAATAGTGTCTGGGATGGTGTTTCTCAATCTTATCCATGGCGGTAGAGATGCGACTTCAATACCCGCTAACTCCTTAATAAGATCTCTACAACATGCCTTGACGAAATCTTTCGGTAGCATTTGTTATGGCTCATTATTTACTGCTGCTATTAGGACACTTAGGTGGGAGATAAGGGGTTTCCGGTCGAAGATCGGCAACAATGAGTGTTTGCTTTGCTGTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTGGTCCGATTCTTTAACAAGTATGCCTATGTTCAGATAGCTGTTAATGGCAAAAGCTTTAACCGTTCAGCAAGAGATGCCTGGGAGTTACTCCAGTCAACCGGTGTTGAAGCACTTGTAGCATATGACTGTTCAGGTGCCGTCCTGCTAATGGGCGCTATCTGTGGTGGTTTGATAACTGGAACAAGTTCCGGCGTTTGGGCGTGGTACAGATTCGGGGATGGAGACAGAGTATTTATGATCGGAACCACATCTATGTTGATGGGGATGGTCTTGGTTGGAGTGGCCATGGTTGTGGTGGAAAGTGCTGTGACATCCATATATATCTGCTATGCGGAGGACCCCTTATTGATTAGGAGATGGGACACTGAATTTTTCAACCAAATGTCTGAGACACTTCACCAGAGACTTCAACATAGGAGTGCTCGAGTAAGGGAAGTTCTAACCCACTCACAACTTGAGTAA	1530	0.4654	MESPSFSSSSSDSGTIATSDQNAERSRRSGEAHEAVTFEQSRRWHDVFWSGIFIIHLLFLALILGVLGLDRFQERDRLKIGIYTGPLHRREHGFTEDYWPLYAVASGVGTVLGLSWLLLLGYGANQMMKVSVHILTTYLAVISVLCFWAEQLFWGVVFATGAALQFLYVISVIDRLPFTMLVLQKAMRMVCSLPEVKRVAYAFMLVVLLWMALWSFGASGVVASSMFDVGCWWVLLVSQQVVLLIPSVPVGSWIFSVSLFWTGAVLCNTVHVIVSGMVFLNLIHGGRDATSIPANSLIRSLQHALTKSFGSICYGSLFTAAIRTLRWEIRGFRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVNGKSFNRSARDAWELLQSTGVEALVAYDCSGAVLLMGAICGGLITGTSSGVWAWYRFGDGDRVFMIGTTSMLMGMVLVGVAMVVVESAVTSIYICYAEDPLLIRRWDTEFFNQMSETLHQRLQHRSARVREVLTHSQLE	509

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g0839	509	PANTHER	CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)	26	498	IPR007603	GO:0022857\|GO:0055085
	Lele55g0839	509	Pfam	Plasma-membrane choline transporter	156	470	IPR007603	GO:0022857\|GO:0055085
	Lele55g0839	509	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lele55g0839	509	MobiDBLite	consensus disorder prediction	1	31	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g0839	Lele-ChrLele55	5774065	5777456	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele53g0650	53	16661864	16665299	Lele55g0839	55	5774065	5777456	hybridization
	Lele54g0660	54	13526602	13533782	Lele55g0839	55	5774065	5777456	hybridization