Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0835 ATGGGGTTCTCCGATTACATTCAAGCATTAGAATCTGAACGCCGTAAAATCCACGTCTTCTCCAAAGAGCTTCCTCTTTCCTTGGAACTCGTTACCCAAGCCATTGAAGCCTGTAGGCTACAGTTATGTGGAAGGACGACGACGACCTCGGAGGAGCAGAATTTGAAACGGCAATCGGAGTGTTCATCAGGACAGACGTCATCGGAAGGGCCTGTTTTGGAGGAGTTCATACCTATAAAGAAAAGAGCATCCTCGGATTGTGGGGAAGAAGACGATGAAGTAGATGTGCAACACTCGCATAAACCCAAGATTGCCAAGGATAATCATAAGAACACCGATAAGAAAAAATCGGATTGGCTTAGATCGTTACAACTCTGGAATCCACAATCCCCAGTTCAAGAGGATATTCCTCGGAAAACGTCGGCGTCGGAAGTAAACAGAGACGGAGATGCTTTCCGGCCATTCCACGGAGAGGCAAGTGTTGGAGAGAGTACTGCATTAACGGCGGCCAAAGCATCCTCTTTGCCGGCGCCGGCTCCTCCAGTCGCCGGAAACAAGAAGAGAGAAGAGAAAGAAGGAAATAATAAAAGCAATAAGCAACGACGATGCTGGTCTCAGGAGCTGCATAAGCGATTCGTGAACGCCCTTCACCAACTTGGTGGAGCAGATTCTGCAACACCGAAGCAGATAAGGGAACTTATGAAGGTTGATGGCCTAACAAATGATGAAGTGAAGAGCCATTTACAGAAATTTCGATTGCACACGAGGAGGTCAAGTCCATTGATTCAGAACAATGGCGATTCCCGAACGGCTCCATTTGTAATCGTGGGGAACTTTATAGGGCAACCGCCGGAACATGCAGCGGCGGTTCTGATGAAGGGTAAGGGGAGGCAATTACGTTCAAATTCAGAAGACAGCAAAGTGGCTGATCATTCAAATTCACCAACTTCCCTCTTGCTCCACACATACCACTACAGCTTGCCCTCGCTATTCAACTTGGAGATGCTATTCCATAAAACATAA 1023 0.4731 MGFSDYIQALESERRKIHVFSKELPLSLELVTQAIEACRLQLCGRTTTTSEEQNLKRQSECSSGQTSSEGPVLEEFIPIKKRASSDCGEEDDEVDVQHSHKPKIAKDNHKNTDKKKSDWLRSLQLWNPQSPVQEDIPRKTSASEVNRDGDAFRPFHGEASVGESTALTAAKASSLPAPAPPVAGNKKREEKEGNNKSNKQRRCWSQELHKRFVNALHQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSSPLIQNNGDSRTAPFVIVGNFIGQPPEHAAAVLMKGKGRQLRSNSEDSKVADHSNSPTSLLLHTYHYSLPSLFNLEMLFHKT 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0835 340 MobiDBLite consensus disorder prediction 75 120 - -
Lele55g0835 340 MobiDBLite consensus disorder prediction 122 139 - -
Lele55g0835 340 MobiDBLite consensus disorder prediction 184 202 - -
Lele55g0835 340 Pfam Myb-like DNA-binding domain 201 250 IPR001005 -
Lele55g0835 340 MobiDBLite consensus disorder prediction 140 154 - -
Lele55g0835 340 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 254 IPR006447 GO:0003677
Lele55g0835 340 MobiDBLite consensus disorder prediction 49 70 - -
Lele55g0835 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 256 IPR017930 -
Lele55g0835 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 314 IPR044787 GO:0003700|GO:0006355
Lele55g0835 340 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Lele55g0835 340 FunFam Myb family transcription factor 198 256 - -
Lele55g0835 340 MobiDBLite consensus disorder prediction 49 202 - -
Lele55g0835 340 Gene3D - 198 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0835 Lele-ChrLele55 5742554 5744033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0835 5 279 G2-like Transcription Factor Family AT1G68670 47.315 7.61e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele55g0835 Myb_DNA-binding 6.9e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0654 53 16694767 16696251 Lele55g0835 55 5742554 5744033 hybridization
Lele54g0664 54 13564508 13568969 Lele55g0835 55 5742554 5744033 hybridization