Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0832 ATGGATGCGAGTAGTTCCGTAGATGAAAGCACTGCGAGTGATTCGGTCTCCATATCGCTCTCTCCGGCGATAACTGTATCTCCGACTATGAACCTGACGCTTCAGAAGTCATCGCCGCCTTGTCCCAATAGTCTCTGCCCGGTTGGCAGCGGTGCTAGTACTATTGTGGATTCCGATGGCGGTGTTGAGGCAGAGTCCCGGAAGCTGCAGTCGTCGAAATACAAGGGAGTGGTGCCACAGCCCAATGGACGATGGGGGGCCCAGATATATGAGAAGCACCAGCGTGTTTGGCTGGGCACGTTCAACGAGGAAGATGAAGCCGCCAGGACGTACGACATCGCCGCCCAGAGGTTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCCCCTCAACGGAAATAACTCCACTGTTGATGCGTCCGATGACGATATCGAGACGGACTTCCTTAACTCGCATTCCAAAGCCGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGACGAACTCGAGCAGAGCAAGCGCAACGGCGGGTTGGCCAGAGGGAGCGACGGCAAGTCACGGCGGGACGGCGGCGCAGGGTCGTGCTTTGATCGGACACAGAAAGCGCGCGAGCAGCTGTTCGAGAAAACCGTCACGCCAAGCGACGTGGGGAAGCTGAATCGATTGGTGATACCCAAGCAGCACGCGGAGAGGCACTTCCCGTTACAGAGCGGAGGCGCTGCTTCTTGCCCGACGACGGCGGCGGTGGCGAAGGGAGTGCTTCTGAATTTCGAGGATGATGGAGGAAAAGTGTGGAGGTTTCGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTAACAAAAGGATGGAGCAGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGCGATACGGTCAGTTTCCACAGGTCAACAGGACCGGATCGGCAGCTCTACATTGACTGGAAAGACAGAAATAACCGGGGCGGAGTCGGTGGTGAAGGGACCGGAATGGAAGGGTTGTACAACCCGGCAGGACCGGTGGTGGAGCCTGTTCAGATGGTACGGCTCTTTGGGGTGAACATTTTGAAAATGCCGCCGTCGGAGTCCGTAGGGGGAAGCTGCCACGGCAAGAGGAAAGAGATGGGGCTGTTGACTTTAGAGTTTAGCAAGAAGCCAAAGATAATTGGAGCTCTGTAA 1182 0.5609 MDASSSVDESTASDSVSISLSPAITVSPTMNLTLQKSSPPCPNSLCPVGSGASTIVDSDGGVEAESRKLQSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARTYDIAAQRFRGKDAVTNFKPLNGNNSTVDASDDDIETDFLNSHSKAEIVDMLRKHTYNDELEQSKRNGGLARGSDGKSRRDGGAGSCFDRTQKAREQLFEKTVTPSDVGKLNRLVIPKQHAERHFPLQSGGAASCPTTAAVAKGVLLNFEDDGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHRSTGPDRQLYIDWKDRNNRGGVGGEGTGMEGLYNPAGPVVEPVQMVRLFGVNILKMPPSESVGGSCHGKRKEMGLLTLEFSKKPKIIGAL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0832 393 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Lele55g0832 393 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Lele55g0832 393 SUPERFAMILY DNA-binding pseudobarrel domain 206 318 IPR015300 -
Lele55g0832 393 MobiDBLite consensus disorder prediction 168 196 - -
Lele55g0832 393 CDD B3_DNA 207 305 IPR003340 GO:0003677
Lele55g0832 393 Gene3D - 196 325 IPR015300 -
Lele55g0832 393 CDD AP2 72 127 IPR001471 GO:0003700|GO:0006355
Lele55g0832 393 Pfam B3 DNA binding domain 208 319 IPR003340 GO:0003677
Lele55g0832 393 MobiDBLite consensus disorder prediction 1 20 - -
Lele55g0832 393 ProSiteProfiles B3 DNA-binding domain profile. 208 320 IPR003340 GO:0003677
Lele55g0832 393 MobiDBLite consensus disorder prediction 168 195 - -
Lele55g0832 393 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Lele55g0832 393 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Lele55g0832 393 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Lele55g0832 393 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 364 IPR044800 GO:0003700
Lele55g0832 393 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Lele55g0832 393 SMART B3_2 208 320 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0832 Lele-ChrLele55 5724857 5726038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0832 4 392 RAV Transcription Factor Family AT1G13260 58.228 2.64e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lele55g0832 B3 2.9e-28 CL0405