Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0829 ATGGCTGGAGCATCGTGGTTGGTGGACAAAAGTAGAATAGCAACCAAAATAAAGAGTGCTTCTGGGGCATTTGATCCTGAGAAGGTTAAATGGAAAAGCAATCCTACCAGAGCTTGCCCTAATTGTCAGCACATTATTGATAACAGCAATGTAACACAAGAATGGCCTGGATTGCCAAAGGGCGTGAAATTTGATCCATCAGATCAAGATATAATATGCCACTTGCTTGCTAAAGTTGGTGTGGTGAATTCAAGACCGCATCCTTTCGTTGATGAATTTATTACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCGAAACATTTACCAGGTGTTAATCAAGATGGAAGTGCAACCCACTTCTTCCATAGAGCAATCAAGGCTTACAATACCGGCAATCGAAAGCGTAGAAAAATACACGGTCAGGATTCTGGGGATGTTCGCTGGCACAAGACCGGAAGAACCAAACCTGTCATGTTGGACGGGGTTCAGAAGGGCTGTAAAAAGATTATGGTTCTTTATATGACCATGGTTAGAGGCGGTAAAGCCGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACACAAGAGGATGAGAAGGAAGGAGACTATGTTGTCTCTAAAGTTTTTTACCAGCAGCAGCAACAGGTCAAATCCGGGGATAAGGATGACCTGGATATTCCTGCAAGCAACGTGGATATTCCTGAAAGTACCGAAAGCATGGGAGCATCGACTGTGCAAGTTGATCCAGTCACCCCCAAATCAGTGACCCCTGATCCACCTTGTAACAAAAGGCCACATTCAAACATCGATGTGGGACTAGAATCGCATTCTATTCCTCAGCATCCTTCAATGGATTGTGTAGAAGATGCGTCTCGAGCAGGTTGTGAAGAGCCAAAAACTGAGATACTCAAGGAAGAAAATCAAAACAGTAATGAAGGAATGAATGATAATGAAAACGATGATGATAATGAAGAACCTAAATGGTGGGATAGTGAGTCACAGCATCTGTTGAATTCGCAACAACTCGTTGAAGCATTGTCCTTGTGTGAGGACCTCTTTCACAGCCAATCTCCCAATAGAGATGACAAAAGCGAAGAACACAAGGACCGACCCGGTCTTTCTGTGTATGCTCAACTTGGACCAGAGCATCTGAAAAAGGACCTTGAAGAGTGCCAAAATCTTGCAAATATAGAACTCGATACGCCTCCTGAGTTTCGACTAAGTCAGCTGGAGTTTGGTTCACAAGATAGCTACACTGCCTGGGGTGGCAGCAAGGCAGAGAACTGA 1302 0.4355 MAGASWLVDKSRIATKIKSASGAFDPEKVKWKSNPTRACPNCQHIIDNSNVTQEWPGLPKGVKFDPSDQDIICHLLAKVGVVNSRPHPFVDEFITTLEVDDGICYTHPKHLPGVNQDGSATHFFHRAIKAYNTGNRKRRKIHGQDSGDVRWHKTGRTKPVMLDGVQKGCKKIMVLYMTMVRGGKAEKTNWVMHQYHLGTQEDEKEGDYVVSKVFYQQQQQVKSGDKDDLDIPASNVDIPESTESMGASTVQVDPVTPKSVTPDPPCNKRPHSNIDVGLESHSIPQHPSMDCVEDASRAGCEEPKTEILKEENQNSNEGMNDNENDDDNEEPKWWDSESQHLLNSQQLVEALSLCEDLFHSQSPNRDDKSEEHKDRPGLSVYAQLGPEHLKKDLEECQNLANIELDTPPEFRLSQLEFGSQDSYTAWGGSKAEN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0829 433 MobiDBLite consensus disorder prediction 295 311 - -
Lele55g0829 433 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Lele55g0829 433 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Lele55g0829 433 MobiDBLite consensus disorder prediction 220 333 - -
Lele55g0829 433 MobiDBLite consensus disorder prediction 237 256 - -
Lele55g0829 433 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 397 IPR044799 GO:0003700
Lele55g0829 433 MobiDBLite consensus disorder prediction 360 377 - -
Lele55g0829 433 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Lele55g0829 433 MobiDBLite consensus disorder prediction 359 378 - -
Lele55g0829 433 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Lele55g0829 433 FunFam NAC domain-containing protein 8 67 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0829 Lele-ChrLele55 5661729 5665581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0829 5 218 NAC Transcription Factor Family AT4G28500 50.455 6.18e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele55g0829 NAM 2e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0661 53 16781100 16785261 Lele55g0829 55 5661729 5665581 hybridization
Lele54g0671 54 13659172 13663648 Lele55g0829 55 5661729 5665581 hybridization