Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0826 ATGAAAAGAGAGGAAGATTATGGGCAGTGTTCTTCACAGGCCATAAACAACTTCCACAGCTATCAAGAGCAGTTACTTCTGCAACAGATGCATCAGCAACAGAACACTATGTTTCCAGAGGTTTCTCCGAGGATTATCCCTCCGGTTCATCACTCCTTCAACCAGCCGGCTCATCATCACTTTTCCAATCCGGTCCGAGTAGACGCCCACCATGACCCGTTTCTTCATCTTCCTCCCCCACCTCCTCCAGCTGCTGGACCCTATGCTAGTTTGTTTAACAGGAGGGTTCCTTCTCTGCAGTTTGCCTACGACGGTTCACCTTCCGACCATCTCCGGCTCTTATCAGAGGCTCTTGGACCCATTGTTCAACCCGGTTCAGCCCCATTCGGCCTCCAAGCCGAGCTGGGAAAGATGACAGCTCAAGAAATCATGGACGCTAAGGCTCTCGCAGCTTCCAAGAGTCACAGTGAAGCTGAAAGAAGACGCAGAGAAAGAATCAATAACCATCTCGCCAAACTTCGCAGCTTATTGCCCAGCACAACCAAAACGGATAAAGCATCGTTGCTGGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGAGGCAGACGTCGTTGATAGCAGAAACAAGTCCGGTGCCGACGGAGGTTGACGAGCTGACGGTGGACACGGCGGATGAGGATGACGAAGGGAAGTTTGTGATTAAAGCATCGTTCTGTTGCGAGGATAGGTTAGATCTGTTGCCGGAACTGATAAAGACATTGAAAGCATTGAAGTTAAGAACGCTGAAAGCAGAGATCACCACACTTGGTGGAAGGGTGAAGAATGTGTTGTTCATTACTTGGGAAGAAGATGGAGAATCTCAGAGCAGTGGCGAGCTTCATCATCATAATCATCAGAACCAGATGATGCATCAGCAACAGTATTGTATCAACTCGATACAAGAAGCTCTTAGGGCAGTGATGGAGAAGAGTAATGGTGGAGATGAGACAACAAGTGGGGCCGTTAAGAGACAAAGGACTAATAACCTTAACATCCTCGAACACAGGTCTTTATAA 1056 0.482 MKREEDYGQCSSQAINNFHSYQEQLLLQQMHQQQNTMFPEVSPRIIPPVHHSFNQPAHHHFSNPVRVDAHHDPFLHLPPPPPPAAGPYASLFNRRVPSLQFAYDGSPSDHLRLLSEALGPIVQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDTADEDDEGKFVIKASFCCEDRLDLLPELIKTLKALKLRTLKAEITTLGGRVKNVLFITWEEDGESQSSGELHHHNHQNQMMHQQQYCINSIQEALRAVMEKSNGGDETTSGAVKRQRTNNLNILEHRSL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0826 351 CDD bHLH_AtAIG1_like 145 222 - -
Lele55g0826 351 Pfam Helix-loop-helix DNA-binding domain 153 199 IPR011598 GO:0046983
Lele55g0826 351 PANTHER TRANSCRIPTION FACTOR BHLH30 33 344 IPR045847 GO:0003700|GO:0006355
Lele55g0826 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Lele55g0826 351 MobiDBLite consensus disorder prediction 324 351 - -
Lele55g0826 351 SMART finulus 156 205 IPR011598 GO:0046983
Lele55g0826 351 MobiDBLite consensus disorder prediction 325 351 - -
Lele55g0826 351 FunFam transcription factor bHLH30 145 208 - -
Lele55g0826 351 Gene3D - 145 206 IPR036638 GO:0046983
Lele55g0826 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 206 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0826 Lele-ChrLele55 5631423 5633142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0826 11 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 51.762 2.77e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele55g0826 HLH 1.7e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0663 53 16803872 16807979 Lele55g0826 55 5631423 5633142 hybridization
Lele54g0672 54 13668141 13670616 Lele55g0826 55 5631423 5633142 hybridization