Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0764 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAAGTGACTTTCTCCAAAAGGAGAAATGGATTGTTCAAGAAAGCTCATGAGATCTCTGTCCTCTGTGACGCTGAGGTCGCTCTTATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACAGATTCTTGCATGGATAAGATTCTGGAACGCCATGAAAGGTATGCTTATGCGGAGAGACAGCTAGCTGGAGGACATGATTCTGAGTCGCAGGTAAACTGGACGATTGAATATTCTAGGCTGAAAGCTAAGATTGAGCTGTTGCAGAGAAACCATAGGCACTATATGGGAGAAGATCTGGCTTCCATGAGCCTCAAAGAGCTCCAGAGTCTCGAGCAGCAGCTTGATACTTCCATCAAACAAATTCGCACACGCAAAAACCAGCTCATGTATGATTCCATTGCCGAGCTTCAGAAAAAGGAGAAAGTGATCCAGGAGCAGAATAGTATGCTGGCAAAGAAGATAAAGGAGAAAGAGAAGGCGGCGGCGGCACAGCATATGACATGGGAGCATCAAAACCATGGAGCACCTAATTCCTCTTACCTTCTCCCACCTACACTTCCCACTCTCCATGTCGGGGGGAGTTACAGAGAGGAAGCAGCAGAAAGGAACGAGCTTGATCTAACCTTGGAACCACTCTATTCCTGCAACCTCGGATGTTTCTAG 720 0.4681 MGRGRVQLKRIENKINRQVTFSKRRNGLFKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMDKILERHERYAYAERQLAGGHDSESQVNWTIEYSRLKAKIELLQRNHRHYMGEDLASMSLKELQSLEQQLDTSIKQIRTRKNQLMYDSIAELQKKEKVIQEQNSMLAKKIKEKEKAAAAQHMTWEHQNHGAPNSSYLLPPTLPTLHVGGSYREEAAERNELDLTLEPLYSCNLGCF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0764 239 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lele55g0764 239 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lele55g0764 239 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele55g0764 239 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lele55g0764 239 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele55g0764 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele55g0764 239 Coils Coil 126 146 - -
Lele55g0764 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele55g0764 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Lele55g0764 239 Coils Coil 96 116 - -
Lele55g0764 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele55g0764 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele55g0764 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele55g0764 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele55g0764 239 Coils Coil 152 172 - -
Lele55g0764 239 FunFam Floral homeotic protein APETALA 1 13 68 - -
Lele55g0764 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0764 Lele-ChrLele55 5109064 5112932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0764 1 239 MADS-box Gene Family AT1G26310 61.417 1.93e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele55g0764 K-box 1.9e-31 No_clan