Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0746 ATGGCTAGAAAAGTCCCGTGCTTGCTTACACATAGACGCTTATCCTCCTCCACCCCTGAGATTCCATCCCTTTACTCCTTCCTTCAACCATCTATCTTTACCCTTAAAAGGAACCCTTCAGTTTCTCAGGAACCCACCAAACTCCCAACTTTACCACCTCGTTCCCTAACTCCAGAAGAAGTAACAGCCCTGCAAAATACTATTCATAAGTCTCTTATCAGCAGTGACACAGATGAGGCATGGAAGTCTTTCAAGATTCTAACAAACAACTCAGCCTTCCCAAGTAAGTCAATAACCAATTCCCTCATCACCCACTTGTCCTCACATGGTGACATTCATAATCTCAAGAGGTCTTTTGCATCTGTAGTTTACATGATAGAGAAGAACCCTAGAATATTAGATTTTGAAACAGTTCATGCCATGCTTGATTCTATGAAATGTGCCAATCTTGCAGCCCCTGCTTTTGCCCTTGTCAAATGCATGTTCAAGAACAGGTTTTTTGTTCCATTTAGTGTCTGGGGCAGTGTGCTTGTTGAAATTAGTCGGAAGAATGGTAACCTTGCTGCTTTTATAAGCGTTTTTGAAGAGGATTGTAGGATTGCTTTGGATGAGAAATTGGATTTCATGAAACCTGATCTGGCTGCTTGTAATGCGGCACTAGAAGGGTCTTGTCGTGACCTTGAATCAGTGAGCGATGCTGAAAAGGTTGTTGAAACAATGACACTTTTGGGTGTTAGACCAGATGAATCCAGTTTTGGATTTCTTGCTTATTTGTATTCATTGAAGGGGCTTGAACAAAAAATAGACGAGTTAAAATTTTTAATGGGTGGCTTTGGTTTCTCAGACAAAAAGGAATTCTATTGTAATTTAATACAAGGGTATGTTAAGTCAGGCAATTTAGCATCAGTTGAGTCAACAATTCTTCAAAGTTTGAATGATAGAGATGACAAAAGTTGGAATTTTGGGGAAGAAACTTACTGTGAAGTAGTCAAGGGATATCTTCAAAATGGACATATTAAGGGATTAGCAAATTTAATTCTTGAAGCTCAGAAGTTAGAGCCTTCAAATACCGTAGATAAATCTATAGGTTTTGGTATTGTTAGTGCATGTGTTAACACTGGATTATCGAACAAGGCACACAGCATTCTTGATGAAATGAATGTTCTAGGAGGCTCTGTGGGTCTCGGGGTCTATGTGCCAATCTTAAAAGCTTACTGCAAAGAAAATCGAACTGCTGAAGCTACTCGATTGGTCATGGAGATTAGTAATTCAGGTCTAAAATTGGACGTGGAAACCTATGATGCTCTAATAGATTCATCCATGACCAGCCAAGATTTTCAGTCGGCCTTTACATTATTTAGGGATATGAGGGAGGCAAGAATTTCTGATTTGAAGGGGAGTTACCTAACTATAATGACAGGTTTGATGGAAAACCATCGACCCGAGTTGATGGCGGCTTTCTTAGATGAGGTGGCTGAGGACCCTCGAATTGAAGTTGGTACTCATGATTGGAATTCTATCATTCATGCTTTCTGTAAAGCTGGGAGACTGGAAGATGCTAGAAGGACATTCAGAAGGATGATATTCCTGCAATTTGAGCCAAATGATCAGACATATTTGTCCCTAATTAATGGGTATGTCTCGGCGGAGAAATATTTTAATGTTCTAATTTTGTGGAATGAGGTGAAGCGGAAGTTTTCAGCTGATGGACAGAAAGGGATCAAATTTGACCACGGTCTTGTTGATGCTTTCTTATATGCTATGGTGAAGGGAGGTTTCTTTGATGCAGTTATGCAAGTTGTGGAGAAATCCAGTGAGATGAAGATTTTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGTCAAAGTTAAGAAAAAGAAACTTCAGAAAAATGGAAGCACTTATTGCTTTTAAAAACTGGGCTGGTTTAAATGCTTGA 1965 0.3944 MARKVPCLLTHRRLSSSTPEIPSLYSFLQPSIFTLKRNPSVSQEPTKLPTLPPRSLTPEEVTALQNTIHKSLISSDTDEAWKSFKILTNNSAFPSKSITNSLITHLSSHGDIHNLKRSFASVVYMIEKNPRILDFETVHAMLDSMKCANLAAPAFALVKCMFKNRFFVPFSVWGSVLVEISRKNGNLAAFISVFEEDCRIALDEKLDFMKPDLAACNAALEGSCRDLESVSDAEKVVETMTLLGVRPDESSFGFLAYLYSLKGLEQKIDELKFLMGGFGFSDKKEFYCNLIQGYVKSGNLASVESTILQSLNDRDDKSWNFGEETYCEVVKGYLQNGHIKGLANLILEAQKLEPSNTVDKSIGFGIVSACVNTGLSNKAHSILDEMNVLGGSVGLGVYVPILKAYCKENRTAEATRLVMEISNSGLKLDVETYDALIDSSMTSQDFQSAFTLFRDMREARISDLKGSYLTIMTGLMENHRPELMAAFLDEVAEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMIFLQFEPNDQTYLSLINGYVSAEKYFNVLILWNEVKRKFSADGQKGIKFDHGLVDAFLYAMVKGGFFDAVMQVVEKSSEMKIFVDKWRYKQAFMETHKKLKVSKLRKRNFRKMEALIAFKNWAGLNA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0746 654 Gene3D Tetratricopeptide repeat domain 365 461 IPR011990 GO:0005515
Lele55g0746 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Lele55g0746 654 Gene3D Tetratricopeptide repeat domain 177 362 IPR011990 GO:0005515
Lele55g0746 654 TIGRFAM PPR: pentatricopeptide repeat domain 504 535 IPR002885 -
Lele55g0746 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Lele55g0746 654 Pfam PPR repeat family 504 547 IPR002885 -
Lele55g0746 654 Gene3D Tetratricopeptide repeat domain 462 622 IPR011990 GO:0005515
Lele55g0746 654 PANTHER BNAC05G43320D PROTEIN 14 653 - -
Lele55g0746 654 Pfam Pentatricopeptide repeat domain 416 462 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0746 Lele-ChrLele55 4993708 4995672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0746 211 565 Glycosyltransferase AT1G05670 21.827 1.69e-14 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0745 53 17451847 17453811 Lele55g0746 55 4993708 4995672 hybridization
Lele54g0738 54 14302231 14306069 Lele55g0746 55 4993708 4995672 hybridization