Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0737 ATGGTGTCGCAAATGACGATCATTGCTCGGGCGCGTTCTCTGATAAAAACGTTTCACCCTAAATACGCTTACACCTCCGTGAAGACGATTACCACCTTCCCTTCCCTCTCTCAGGAGCCTCAACTCGCCGAATCTCCGACACCGGCCGCCCCAACCCCACTTCCTCCCAACCCGTCCTCCGGTAGTCCTCTCTACAATGAGAATTGGCGCAGCCCAATTCCGCCTTCTGCAACCCAGTCCATGATCCCACTAGGGTTTCTTAATCTAGTACCCGGACATCGCATCCAAACAATGGCACATACATTTGATGCTAAGAGCTTGATGGATCAGTTTGCTGATTGGGTGGCCTCTCAGGAATGGGCTGCTATCAAAGAGTTGTTCGAGTCTTGGGTTAAGTCATTGGACAAGAGTGGGAAGCCGAATAAGCCTGATGTGAATTTGTATAATCATTATCTGAGAGCGAACTTGATGATTGGTTATTCTGCTGGGGAGCTTCTTGATTTGTTAGCTGGAATGGAGGATTTTGGTGTCAGACCTAATACTGCTTCGTTCAATTTGGTGCTTAAAGCAATGTACCGCGCCAAGGAGACTGAAGCTGCTGAGAAGTTGCTGGAACGGATGCTGCTGACTGGAAATGAATCTCGCCCTGATAATGAATCGTATGACTTGGTCATTGGAATGGTGTTTTTGACTGGCCAGATTGATGCTGCATTGAAGTACATAGATTTGGCTTTGAAATCAAGTTATATGTTGTCAATGAAAGTGTTTACTAACTGTGTAAATAGTTGTATCAAAAGGGGTAGGCTAGATACTTTGGCAGTAATAATTGAAAAGTGCAAGACAATGGATCAGAACAAGGCTCTTTGCCCTCCGTGGAATGTGTGCTACTTAATAGCTGAAACTGCAATGCAGCTGGATAATAGCAAGCTAGCTTATTATGCACTGGAGTTTATGGCTATGTGGATTGCAAGGGGTGAGCAGGCAAGACCAGCTGCATTGCTTTCTGTAGACGAAGGTTTAGTTGTGTCAGCTCTAGCCACTGCAGGTAGGACCTATAGTACTAATCTGCTAGATGCAGCATGGTCTATTTTACGTCGCTCATTGCGTAAGAGAAAGGCTCCTAACCCTGAATCTTATCTCGGAAAGATAAGTGCCCTTGCATCAATGGGCAACTTACAAAGGGCTTTTAGTACGCTACATGACTTTGAGGTTGCTTATGGAGATTCCAGTGAAGAAGCTGAAGAAATGTTCTCTCCCTTTACTTCGTTACATCCATTGGTTGTGGCATGCTGCAAGAAGGGATTTGAGACTTTGGATTCTGTTTATTTTCAACTGGAAAGTTTGAGCGGAGCAGAGACGCCTTATAAATCTGTGGCTGCTCTAAACTGTATCATTTTGGGGTGTGCAAACATATGGGACCTTGATCGTGCATACCAAACTTTTGAAGCAATTGGATCCTCTTTTGGATTGACACCTGATATTCATTCTTATAATGCACTGATGCATGCATTTGGGAAGCTCAAAAAGACACATGAAGCAACTAAGGTGTTTGAGCACGTAGTGAGCTCGGGTGTAAAGCCTAATGCAATGTCATATTCTCTGCTCGTGGATGCCCACCTCATGAACCGAAATGTCAAAGACTCTCTAACTGTAATTGATGATATGGTGGCTGCTGGATTTGAACCTGCAAAAGAGATGCTAAAAAAGGTTCGAAGGCGATGCATGCGAGAGATGGACTATGACAGTGATGATAGAGTTCAGTCCTTCGCCAAATCTCTGAACATTCGAATGGGTCCAGAAGGCCGTCGGGACATGCTATTCAATCTTGATTACAGCATGGATTATGCTTAA 1851 0.4462 MVSQMTIIARARSLIKTFHPKYAYTSVKTITTFPSLSQEPQLAESPTPAAPTPLPPNPSSGSPLYNENWRSPIPPSATQSMIPLGFLNLVPGHRIQTMAHTFDAKSLMDQFADWVASQEWAAIKELFESWVKSLDKSGKPNKPDVNLYNHYLRANLMIGYSAGELLDLLAGMEDFGVRPNTASFNLVLKAMYRAKETEAAEKLLERMLLTGNESRPDNESYDLVIGMVFLTGQIDAALKYIDLALKSSYMLSMKVFTNCVNSCIKRGRLDTLAVIIEKCKTMDQNKALCPPWNVCYLIAETAMQLDNSKLAYYALEFMAMWIARGEQARPAALLSVDEGLVVSALATAGRTYSTNLLDAAWSILRRSLRKRKAPNPESYLGKISALASMGNLQRAFSTLHDFEVAYGDSSEEAEEMFSPFTSLHPLVVACCKKGFETLDSVYFQLESLSGAETPYKSVAALNCIILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMHAFGKLKKTHEATKVFEHVVSSGVKPNAMSYSLLVDAHLMNRNVKDSLTVIDDMVAAGFEPAKEMLKKVRRRCMREMDYDSDDRVQSFAKSLNIRMGPEGRRDMLFNLDYSMDYA 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0737 616 PANTHER OS07G0599000 PROTEIN 1 615 IPR044605 -
Lele55g0737 616 MobiDBLite consensus disorder prediction 46 60 - -
Lele55g0737 616 Pfam PPR repeat family 492 538 IPR002885 -
Lele55g0737 616 MobiDBLite consensus disorder prediction 37 70 - -
Lele55g0737 616 Gene3D Tetratricopeptide repeat domain 423 601 IPR011990 GO:0005515
Lele55g0737 616 Gene3D Tetratricopeptide repeat domain 113 309 IPR011990 GO:0005515
Lele55g0737 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Lele55g0737 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Lele55g0737 616 Pfam Pentatricopeptide repeat domain 142 191 IPR002885 -
Lele55g0737 616 TIGRFAM PPR: pentatricopeptide repeat domain 495 529 IPR002885 -
Lele55g0737 616 TIGRFAM PPR: pentatricopeptide repeat domain 531 562 IPR002885 -
Lele55g0737 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0737 Lele-ChrLele55 4936387 4939563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0737 490 582 Glycosyltransferase AT1G05670 25.806 4.16e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0751 53 17496685 17499850 Lele55g0737 55 4936387 4939563 hybridization
Lele54g0742 54 14330379 14333866 Lele55g0737 55 4936387 4939563 hybridization