Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0729 ATGGAGGAGAGGAATTTCGTTTGCAAGTATTGCGACAAGAAGTACCCATGTGGGAAGTCTCTGGGTGGACACATCAAGACTCATATGAATACTGAACGTTATTCATTGTCTCAATCCAAGGAAGGTAGAATCAATGCCGATGATTGTGTCGTCAAGATCATTGGTGGAAGGAAGAGGAAGAGAGATTTTGGGTCTGAAGAAGAAGCTGCTTCTGGAAACCCCATTTATGGTCTTCGAGAGAATCCCAAGAAAACAACGAGATTCGTACATCCTTCCAACGTTGTTGTTGCACAACAAGAGAGGTTCTGCAAAGAATGTGGGAAATGCTTTCTGTCTCTGAAAGCTCTCTGCGGCCACATGGCTTGTCATTCGGAGAAAGATAAGGGGATGATGACGACGAACAAGTTTGAGAACAACTCTGTGTTTATTAGCATGAAGCAGCAGAAATTGATGGTGGATAGCCAATCGGACACTAAGACATCTGCTCCGAGTCATCCTAGGAGATCCAGAAGAATGAGGTTGAAGACCGTGAATACTGATAATAAAAACGATCACCCTTCTTTTGTTTCTTTGGCAAATGGTTCTTCCTCTGTGTCTGAGGTGGAGAAGGAACAAGAAGAGATCGCTAGGTGTTTGATGTTATTGTCCAAAGACTCTAGCCATAGGGGTCTTTTTGTTTTGCCCACTGAATCTTCGGACAACAATTCTGTTGTGGTAGAGGCAAAATCACCGTCTGTGGACACCATTATTACTTTCAACAATGGTAAAAAAAACTGTGTGTCTAATGGTTTTGAGACCGTGAAGGGGAAGAAGAAGAAGATGGTGCAGTATAATAGCATGAAGTTGAAGTCTGCTGCTGAGATTGTCGATTCTGATAATTCAGATTCTGGGTATTTCAGAACTGGTCCCAAAAAGTTGGATTTTTCAATTGATGGGTATCATTGGAATGGGGAATTCAAGACACCAAAAGTGGAAATCAGGTCTGGGTGTGAGTTTGATCAGAACTATGACACTGAATTGAGGAAGAAGATTCTAATCAAGAACAGAGGAAGAACCAGAAGCACTGAACCCAGAAAGCTAATTTTGGAGGATTTGGATTACAATACAACAGACGGTTCTACAAGGGAAGAAGAGTTCATCAATTGGAGAAAGAGACCAAGATATGATTCTCTTTGCCAAAACAATTCAGTTGGTGTTTCTTGCAAAAGGACACCAAATGGTTTTCACAATGAGGTGTCATCATTGAAGCCAGAGAGCTTAAACAGTGAAAAAATTATCAATGGCTCTCAGGATTCAGCAAAGGAAAGTGATGAAAGCAGCACAGACCCTGATGCTTATACCGCTCCGAGCACTCATAGCAGCAGTGTCATCAGTGGGAAGAAGATCACCAAGTTCAAGGAGAAATTGAAGTCAAAGAAAAGTAGGGACCATGAATGCCCAATCTGCTACAGAAAATTTAAGTCAGGCCAAGCATTAGGAGGTCACAAAAGGTCTCATTTTGTTGGAGGAGGTTCTGAAGAGAAAACAATAGTGATCAGACAAGCTTCTTCTGTTGTTCCATGCTTGATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG 1602 0.4176 MEERNFVCKYCDKKYPCGKSLGGHIKTHMNTERYSLSQSKEGRINADDCVVKIIGGRKRKRDFGSEEEAASGNPIYGLRENPKKTTRFVHPSNVVVAQQERFCKECGKCFLSLKALCGHMACHSEKDKGMMTTNKFENNSVFISMKQQKLMVDSQSDTKTSAPSHPRRSRRMRLKTVNTDNKNDHPSFVSLANGSSSVSEVEKEQEEIARCLMLLSKDSSHRGLFVLPTESSDNNSVVVEAKSPSVDTIITFNNGKKNCVSNGFETVKGKKKKMVQYNSMKLKSAAEIVDSDNSDSGYFRTGPKKLDFSIDGYHWNGEFKTPKVEIRSGCEFDQNYDTELRKKILIKNRGRTRSTEPRKLILEDLDYNTTDGSTREEEFINWRKRPRYDSLCQNNSVGVSCKRTPNGFHNEVSSLKPESLNSEKIINGSQDSAKESDESSTDPDAYTAPSTHSSSVISGKKITKFKEKLKSKKSRDHECPICYRKFKSGQALGGHKRSHFVGGGSEEKTIVIRQASSVVPCLIDLNLPAPVDD 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0729 533 SMART c2h2final6 6 28 IPR013087 -
Lele55g0729 533 SMART c2h2final6 477 499 IPR013087 -
Lele55g0729 533 SMART c2h2final6 101 123 IPR013087 -
Lele55g0729 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lele55g0729 533 SUPERFAMILY beta-beta-alpha zinc fingers 102 499 IPR036236 -
Lele55g0729 533 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele55g0729 533 MobiDBLite consensus disorder prediction 428 457 - -
Lele55g0729 533 Pfam C2H2-type zinc finger 6 29 - -
Lele55g0729 533 Pfam C2H2-type zinc finger 477 499 - -
Lele55g0729 533 Pfam C2H2-type zinc finger 103 125 - -
Lele55g0729 533 ProSitePatterns Zinc finger C2H2 type domain signature. 479 499 IPR013087 -
Lele55g0729 533 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 532 - -
Lele55g0729 533 MobiDBLite consensus disorder prediction 442 457 - -
Lele55g0729 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 477 499 IPR013087 -
Lele55g0729 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Lele55g0729 533 SUPERFAMILY beta-beta-alpha zinc fingers 2 34 IPR036236 -
Lele55g0729 533 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0729 Lele-ChrLele55 4874331 4875932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0729 1 533 C2H2 Transcription Factor Family AT1G26610 35.856 4.41e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g0729 zf-C2H2_6 1.1e-09 CL0361