Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0689 ATGGTGAAGTGGTCGCGCGGCGCCGAGAAGGCAGCGTTAAAGAAAGGGCCATGGACTCCTGAGGAAGACAAGAAGCTCATGGTTTACATTCAACAACATGGCCATGGAAGTTGGTCTTCCTTGCCTGCTAAAGCTGAACAGACAACGAGATCAAGAACCACTGGAACACCCACCTCAAGAAGAGGCTCACCAGAATGGGCATAG 204 0.5147 MVKWSRGAEKAALKKGPWTPEEDKKLMVYIQQHGHGSWSSLPAKAEQTTRSRTTGTPTSRRGSPEWA 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0689 67 MobiDBLite consensus disorder prediction 33 61 - -
Lele55g0689 67 MobiDBLite consensus disorder prediction 1 67 - -
Lele55g0689 67 Pfam Myb-like DNA-binding domain 15 52 IPR001005 -
Lele55g0689 67 ProSiteProfiles Myb-like domain profile. 10 51 IPR001005 -
Lele55g0689 67 CDD SANT 17 44 IPR001005 -
Lele55g0689 67 SUPERFAMILY Homeodomain-like 13 53 IPR009057 -
Lele55g0689 67 Gene3D - 12 61 - -
Lele55g0689 67 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 40 IPR017930 -
Lele55g0689 67 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 46 - -
Lele55g0689 67 MobiDBLite consensus disorder prediction 15 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0689 Lele-ChrLele55 4603552 4604318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0689 8 45 MYB Transcription Factor Family AT3G01140 73.684 7.12e-16 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele55g0689 Myb_DNA-binding 6.9e-09 CL0123