Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0664 ATGGAGGAGAGTAAGTTCGTGTGCAAGTATTGCAACAAGAAGTACCCATGTGGGAAGTCTCTGGGTGGACACATCAGAACTCATATGAGTAATGAACATTCATCGTATAAATCCAAGGAAGTTAAGACCAATGCCGATGATAGTGTCGTTAAGTTCGATGGTGGAAGGAAGCGAAAGAGAGATTTTGGGGCTGAAGAAGCCGCTTCTGAAAACCCCATTTATGGTCTCAGAGAGAATCCCAAGAAGACAACGAAGCTCGTACATCGCAACGCTGCTATACAAAAAGAAAGATTCTGCAAAGAATGCGGGAAAGGCTTTTTGTCTCAGAAAGCTCTCTGCGGACACATGGCTTGTCACTCGGAGAAAGATAAAGCGACGAGGAACAAGTTTGAGAACAATTCTGGGTTGGTCGTGAAGCAGAAAATGGTGACGATGGATGATAGCCAATCGGAAACAGAGACTTCTGCTCCGAATTATCCTCGGAGAACAAGAAGAATGAGGTTCAAGACAGTGAATACTGATACAAATAATCATCACCCTTCTTATGTTCCTTTGACGAATGGTTCTTCCTCTGTGTCTGAGGTGGAGCAAGAAGAAGAGATCGCTAAGTGTTTGATGTTATTGTCCAAAGACTCCGGCCAAAGGGGTCGTTTTGTTTTGCCTACTGAATCTTCGGACAACAATTCTGTTGTGGTAGAGGTAAAATCACCGTCTGTGGATACGAGAATCACTTTCAAAAATGGTTCAAAAAGCTTTATGTCTAATGGTGTTGAGATCGTGGAGGAGGAAGAGAAGAAGAAGAATGTGGTGCTGTATAAGAACATGAAGTTAAAGTCTGCTGAGATTGTCGATTCTGATAATTCAGATTCTGGGTATTTCAGAAATCGACCCAAAAAGTTGGATTTGGATGTTCCAATTGATAATAAGCATCTCATCAGGAACAGGGAATTCAAAACCCCAAAAGTGGAAAACAGGTCAGGGTTTAAGTTGGATCGGAACTATGATTCTGAATATAGGAAGAAGATGCTGATCAAGAACAGAGGAATTTCCAGAAGAACTGAACCCAGAAAACTAATTTTGGAGGATTTGGACTATGATGATACAACAGATGGATTGATAAGGGAAGAAGAGTTCATCAATTGGAGAAAGAGACCTAGCTATAATTCTCTTTGCCAAAACAATTCAATTGGTGTTCCTAACAAAAAGACACCACCAAATGGTTTTCACAGTAAGGGATCATGGAAGCAAGAGAGCTTAAACAGTGAAAAAATTATCAGTGGCTCTTATGATTCAGCATATGATAATACGAGTGATGAAAGTAGCACAGACACTGATGCTTATCCTGCTCCGATATCTCATAGCAGCAGCAAGGTCATCATCAATGGAAAGAAGACGAACCAGTCCAAGACGAAATTGAAGTCAAAGAAAACCAGGGAACATAGATGCCCCATCTGCTACAGAATTTTTAAGTCAGGCCAAGCTTTAGGAGGTCACAAAAGATCTCATTTTGTTGGAGGTTCTGAAGAGAACACAATAGTGATCAGGCAAGATTCTCCTGTTGTTCCATGCCTAATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG 1608 0.4111 MEESKFVCKYCNKKYPCGKSLGGHIRTHMSNEHSSYKSKEVKTNADDSVVKFDGGRKRKRDFGAEEAASENPIYGLRENPKKTTKLVHRNAAIQKERFCKECGKGFLSQKALCGHMACHSEKDKATRNKFENNSGLVVKQKMVTMDDSQSETETSAPNYPRRTRRMRFKTVNTDTNNHHPSYVPLTNGSSSVSEVEQEEEIAKCLMLLSKDSGQRGRFVLPTESSDNNSVVVEVKSPSVDTRITFKNGSKSFMSNGVEIVEEEEKKKNVVLYKNMKLKSAEIVDSDNSDSGYFRNRPKKLDLDVPIDNKHLIRNREFKTPKVENRSGFKLDRNYDSEYRKKMLIKNRGISRRTEPRKLILEDLDYDDTTDGLIREEEFINWRKRPSYNSLCQNNSIGVPNKKTPPNGFHSKGSWKQESLNSEKIISGSYDSAYDNTSDESSTDTDAYPAPISHSSSKVIINGKKTNQSKTKLKSKKTREHRCPICYRIFKSGQALGGHKRSHFVGGSEENTIVIRQDSPVVPCLIDLNLPAPVDD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0664 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 480 502 IPR013087 -
Lele55g0664 535 SMART c2h2final6 480 502 IPR013087 -
Lele55g0664 535 SMART c2h2final6 6 28 IPR013087 -
Lele55g0664 535 SMART c2h2final6 97 119 IPR013087 -
Lele55g0664 535 SUPERFAMILY beta-beta-alpha zinc fingers 98 502 IPR036236 -
Lele55g0664 535 Pfam C2H2-type zinc finger 480 502 - -
Lele55g0664 535 Pfam C2H2-type zinc finger 99 121 - -
Lele55g0664 535 Pfam C2H2-type zinc finger 6 30 - -
Lele55g0664 535 ProSitePatterns Zinc finger C2H2 type domain signature. 482 502 IPR013087 -
Lele55g0664 535 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele55g0664 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Lele55g0664 535 MobiDBLite consensus disorder prediction 430 453 - -
Lele55g0664 535 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Lele55g0664 535 Gene3D Classic Zinc Finger 78 157 - -
Lele55g0664 535 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 534 - -
Lele55g0664 535 MobiDBLite consensus disorder prediction 393 415 - -
Lele55g0664 535 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Lele55g0664 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0664 Lele-ChrLele55 4422923 4424530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0664 1 535 C2H2 Transcription Factor Family AT1G26610 37.255 2.66e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g0664 zf-C2H2_6 2e-05 CL0361