Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0661 ATGGACTTGACTCCAACCCCCACCGCCTCTGCCGCCACCGCCCACTCTGATTCTCTGCATACTTCAACCCCACCGCCTACCCACCCCACCAACACCGCCAAGTCTCCCTCTTTCACTAACGGCTCCCTCAAGCGTCACCACCCTTCGCCTCATCCGCCACCGCCCGCGGTGGTTTCCTACAAGGAATGTCTCAAGAATCACGCCGCCAGCATCGGCGGCCACGCGCTTGATGGTTGCGGCGAGTTCATGCCTTCCTCCGCCTCCAACCCCAGGGACCCGCGCTCCCTCAAGTGCGCCGCGTGTGGCTGCCACCGCAACTTTCACCGCCGTGACCCCCAAGAGCTTCCCTCCACCCCCAACTTCTTAAGCTGCTTCTATCCGCCCCTGCCGGCTCCGCCTCCGCCTCAGCTAGCTCCCCGGGGGTTAAGCCCGAGCACCAGCCCAAGCTCAAGCCCCAGCATCGCCAGTCCGGGCCCGTTATCAAGCCCGTCGCCGCCACCGGTCTCGCATTTCCCTCCTTCTTCCTACCACATATCGGCACCGCATATGCTGATAGCACTCGGGAACGCTTATTCTGGTCCACCCGATGAGCGACATCGGAGCTTCATGAATTCTTCAGCGATGAAGATGACGGAGAAGGAGAGCCCAGGTGGGAGAAAGAGATACAGAACCAAATTCAGCCAAGAACAGAAAGAGAAGATGTTGCAGTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGAGATGATAGAACGGTCCAAGATTTCTGCAATGAGGTTGGGGTTCCAAGAGGAGTGTTCAAGGTTTGGATGCACAACAACAAGAACACTTTCAGGAAAAAACCAGAAACTGGGAATACCCAACAAACTGAGAAAATCAATGAAGGTGATGCAGCTGGTCGTCGAGGTGGTGGTGGGTTTAATTGTGATATTGACGAAGAAGATAATCACATGAATGAAGGTAGCTGTATTAATCTTCAAGTCTCTGTTAATGGATCTTCTTCTTGA 1008 0.5486 MDLTPTPTASAATAHSDSLHTSTPPPTHPTNTAKSPSFTNGSLKRHHPSPHPPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSASNPRDPRSLKCAACGCHRNFHRRDPQELPSTPNFLSCFYPPLPAPPPPQLAPRGLSPSTSPSSSPSIASPGPLSSPSPPPVSHFPPSSYHISAPHMLIALGNAYSGPPDERHRSFMNSSAMKMTEKESPGGRKRYRTKFSQEQKEKMLQFSEKLGWRMQKGDDRTVQDFCNEVGVPRGVFKVWMHNNKNTFRKKPETGNTQQTEKINEGDAAGRRGGGGFNCDIDEEDNHMNEGSCINLQVSVNGSSS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0661 335 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 219 276 IPR006455 -
Lele55g0661 335 MobiDBLite consensus disorder prediction 189 221 - -
Lele55g0661 335 Gene3D - 204 279 - -
Lele55g0661 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 277 - -
Lele55g0661 335 MobiDBLite consensus disorder prediction 142 157 - -
Lele55g0661 335 MobiDBLite consensus disorder prediction 277 314 - -
Lele55g0661 335 MobiDBLite consensus disorder prediction 280 294 - -
Lele55g0661 335 MobiDBLite consensus disorder prediction 1 44 - -
Lele55g0661 335 MobiDBLite consensus disorder prediction 158 172 - -
Lele55g0661 335 FunFam Zinc-finger homeodomain protein 2 205 280 - -
Lele55g0661 335 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Lele55g0661 335 SUPERFAMILY Homeodomain-like 214 280 IPR009057 -
Lele55g0661 335 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Lele55g0661 335 MobiDBLite consensus disorder prediction 1 58 - -
Lele55g0661 335 MobiDBLite consensus disorder prediction 132 174 - -
Lele55g0661 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0661 Lele-ChrLele55 4396771 4397778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0661 58 278 ZF-HD Transcription Factor Family AT1G69600 48.214 1.23e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele55g0661 ZF-HD_dimer 4.7e-29 No_clan