Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0646 ATGGAAGGCGTACATGTATCCTATGTATCTTGTGGACCTTGGCACACAGCGATCGTAACATCTTCTGGCCAGTTATTCACATTTGGGGATGGATCTTTTGGGGCCTTAGGTCTAGGAGATCTTAGTAGCACAAATACTCCTAGGGAAGTAGAAACTTTGAAAGTGTTTAGAATAACCAGGGTCTCCTGTGGTGTTTGGCACACTGCTGCTGCTGTTGAGGTGGCAAATGAATCTGCGGAATCTTCTAGACACTTAGCCGTAGGAAAACTATTCACCTGGGGTGATGGGGATAAAGGCCAACTGGGACATGGTGATAGCGAACCTAGGCTAGTTCCCCAGTGTGTTATTGCATTGGATAACCAAAATATTTGTCAAGTGGCTTGTGGTCACAGTCTCACTGTTGCTTTGACAGCCTCAGGACATGTATATACAATGGGCTGTACTGCGTATGGGCAACTTGGCAGTCCTGCGGCTGATGGAAAATTCCCTACACGGGTTGAAGGTAAAATTGCTGGTAGTTTCATAGAAGATATTGCTTGTGGTTCATATCATATTGGAGTCCTGACTTCCAAAGCAGAGGTTTACACCTGGGGAAAGGGTTCTAATGGGCAGCTAGGTCATGGAGACAATGGTCACCGAGATACACCTGCACTTGTTAAGTTTTTTATAAATAGGCAAGCGAAGAGTGTTGTTTGTGGTTCAAACTTCACTGCTGTTATATGTCCTCATAATTGGGGAAAGCTATTAAGGCTTTCATCTTTTGGCTCCACTGTTCAAGCAGAAAGCAGGCACCCAAAGATCCCAGAACCACATCATAGCCATGTTTTTCCAGCTCTGAATGGAAAACTACAGTTGGTGGGATTCAGTCCTCTAAATGGATCAAATTCTCTTGCTGGAGCATTAGAGAAGGCCCTCAGTTTCTGTGCCTATGTTCGTGATGATTCAAAGCACAGAAACAGCATTTTAAGCCAGGAGGTTATTAGTTTAAGGGCGCTGTGGAAGGACATGGTACAAAGAGTGCCAGAAGGAGGTATTTCGAACTCTAGTGCAGACTTCTCTGCAGAAATCGCCTCTAATGTTCTAAATCAGCCTTTAAATGAGAGCCATATAACAAACAGTATCACTCCTGAAACTGAGTCCAACAGCAGTGCAGAAAATCGGATATTGCCTAGTATTTCCAAAGCACAGAGTGGAAAATTAGAGTGGGTGGTGCAAGATGAACCAGGTGTATACCTCCTTTTACACTCCGCACCTGACGTCTCGGATTATCCGAGCTCCATGCAAGATCTACGGTTCGACTTGAACCCAAAATGTAGGCTTGTTTTAGAAAATGGAGTTGATATGGTCGCCATGGTGCACGTCTCGTTCTATAGAAACTATGGAAAAACCTTCAAGAAGACTCGTCTTCCCTATGAAAAGGAGCGTCTAGATCACGAGCTCAAGCTCGTAGGAGAGTACGGCCTTCGCTGCAAGAGGGAGTTGTGGAGGGTTCAATATGTGTTCAGCCGGATACGTAACGCGGCTAGAATGCTTCTCACGCTCGATGAGAAGAATCCTCGTCGGGTGAAGCTCTTCTTAGGAAGCTGA 1587 0.4524 MEGVHVSYVSCGPWHTAIVTSSGQLFTFGDGSFGALGLGDLSSTNTPREVETLKVFRITRVSCGVWHTAAAVEVANESAESSRHLAVGKLFTWGDGDKGQLGHGDSEPRLVPQCVIALDNQNICQVACGHSLTVALTASGHVYTMGCTAYGQLGSPAADGKFPTRVEGKIAGSFIEDIACGSYHIGVLTSKAEVYTWGKGSNGQLGHGDNGHRDTPALVKFFINRQAKSVVCGSNFTAVICPHNWGKLLRLSSFGSTVQAESRHPKIPEPHHSHVFPALNGKLQLVGFSPLNGSNSLAGALEKALSFCAYVRDDSKHRNSILSQEVISLRALWKDMVQRVPEGGISNSSADFSAEIASNVLNQPLNESHITNSITPETESNSSAENRILPSISKAQSGKLEWVVQDEPGVYLLLHSAPDVSDYPSSMQDLRFDLNPKCRLVLENGVDMVAMVHVSFYRNYGKTFKKTRLPYEKERLDHELKLVGEYGLRCKRELWRVQYVFSRIRNAARMLLTLDEKNPRRVKLFLGS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0646 528 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Lele55g0646 528 PRINTS Chromosome condensation regulator RCC1 signature 58 71 IPR000408 -
Lele55g0646 528 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Lele55g0646 528 PRINTS Chromosome condensation regulator RCC1 signature 24 40 IPR000408 -
Lele55g0646 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 88 139 IPR000408 -
Lele55g0646 528 SUPERFAMILY RCC1/BLIP-II 5 245 IPR009091 -
Lele55g0646 528 Pfam Regulator of chromosome condensation (RCC1) repeat 139 186 IPR000408 -
Lele55g0646 528 Pfam Regulator of chromosome condensation (RCC1) repeat 193 240 IPR000408 -
Lele55g0646 528 Pfam Regulator of chromosome condensation (RCC1) repeat 88 136 IPR000408 -
Lele55g0646 528 Pfam Regulator of chromosome condensation (RCC1) repeat 22 70 IPR000408 -
Lele55g0646 528 Gene3D - 1 81 IPR009091 -
Lele55g0646 528 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 311 - -
Lele55g0646 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 23 74 IPR000408 -
Lele55g0646 528 Gene3D - 82 264 IPR009091 -
Lele55g0646 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Lele55g0646 528 SMART Ribosomal_S4_2 458 526 IPR001912 GO:0019843
Lele55g0646 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 140 191 IPR000408 -
Lele55g0646 528 SUPERFAMILY Alpha-L RNA-binding motif 463 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0646 Lele-ChrLele55 4274167 4281578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0646 451 522 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 87.500 2.55e-37 134