LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g0641	ATGCAACTTATGAAGATTTGTGACAGGCCAATCGCAGCAAGCGCCGATGAAATGGCTTTCTTCCCAGCAAATTTCATATTACAGAACCCTCATCAAGAAGACCACCACCATCAACCTCCAACCTCTCTCAACTCACTTCTCCCTCAAGATTATCATGGAGGAGCGTCTCTTCTAGGGAAGAGATCTTTGACATTTTCAGGGCTTGAACTTGGAGGTGAAGAAGGAAACAATGGAGATGAAGACTTGTCTGATGATGGATCTCAAGCTGGGGAGAAGAAGAGAAGGCTGAACATGGAACAAGTGAAAACACTTGAGAAGAGCTTTGAGCTTGGAAACAAGCTTGAACCTGGGAGAAAAATGCAGCTGGCTAGCTCTCTTGGTCTGCAACCAAGGCAGATTGCTATATGGTTCCAGAACAGAAGAGCAAGGTGGAAGACAAAGCAGCTAGAGAAAGACTATGATCTTCTCAAAAGACAATATGATGCTATCAAAGCTGATAATGATGCCCTTCAAGCTCAAAACCAACAACTCCAAGCAGAGATATTGGCCCTGAAAGGCAGAGAAGTACCAACTGAATCTATAAACCTGAATAAGGAAACTGAGGGATCTTGTAGCAATCGGAGTGAGAATAGTTCAGATATTAAGTTGGATATCTCAAGAACACCTGCTATAGACAGTCCTTTATCTAATCATCATCATCATCATATTACAAGCAGAACCTTATTCCCATCACCAGCATCTAATAATTCTGCAGGTAGGCCTTCTTCAGGAGTGGTCGTTCAGCTTTTTCAAACCTCTTCAATACCAGAACTTCATTGCCATAATCTGAAGAATATTGATCATATGGTGGTGAAAGAAGAGAGCTTAAGCAACATGTTTTGTGGGATTGATGATCAAACTGGGTTATGGCCTTGGTTGGAGCAGCAACATTTCAATTGA	939	0.4207	MQLMKICDRPIAASADEMAFFPANFILQNPHQEDHHHQPPTSLNSLLPQDYHGGASLLGKRSLTFSGLELGGEEGNNGDEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPGRKMQLASSLGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKADNDALQAQNQQLQAEILALKGREVPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSNHHHHHITSRTLFPSPASNNSAGRPSSGVVVQLFQTSSIPELHCHNLKNIDHMVVKEESLSNMFCGIDDQTGLWPWLEQQHFN	312

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g0641	312	MobiDBLite	consensus disorder prediction	229	255	-	-
	Lele55g0641	312	CDD	homeodomain	92	148	IPR001356	GO:0003677
	Lele55g0641	312	PRINTS	Lambda-repressor HTH signature	127	143	IPR000047	GO:0003677
	Lele55g0641	312	PRINTS	Lambda-repressor HTH signature	118	127	IPR000047	GO:0003677
	Lele55g0641	312	MobiDBLite	consensus disorder prediction	193	212	-	-
	Lele55g0641	312	Pfam	Homeodomain	92	145	IPR001356	GO:0003677
	Lele55g0641	312	ProSiteProfiles	'Homeobox' domain profile.	87	147	IPR001356	GO:0003677
	Lele55g0641	312	SMART	HOX_1	90	151	IPR001356	GO:0003677
	Lele55g0641	312	SUPERFAMILY	Homeodomain-like	83	149	IPR009057	-
	Lele55g0641	312	FunFam	Homeobox-leucine zipper protein ATHB-13	84	151	-	-
	Lele55g0641	312	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	77	228	IPR045224	GO:0003700
	Lele55g0641	312	Coils	Coil	139	187	-	-
	Lele55g0641	312	Gene3D	-	84	153	-	-
	Lele55g0641	312	Pfam	Homeobox associated leucine zipper	147	187	IPR003106	GO:0006355\|GO:0043565
	Lele55g0641	312	MobiDBLite	consensus disorder prediction	240	255	-	-
	Lele55g0641	312	MobiDBLite	consensus disorder prediction	69	94	-	-
	Lele55g0641	312	ProSitePatterns	'Homeobox' domain signature.	122	145	IPR017970	GO:0000981\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g0641	Lele-ChrLele55	4221411	4222627	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g0641	18	312	Homeobox Transcription Factor Family	AT1G69780	60.000	1.03e-111	324

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele55g0641		Homeodomain	2.4e-15	CL0123