Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0629 ATGCACTCATTTGTTTCCTGGTTTCATCTGTTTGCTCGTTTAGTTGGAGCTCTGTCGCCTAGGGTTTATGTGGGTCACTCGGTTTACAAAGGGAAGGCTGCGCTTACAGTGACTCCCAGGCCTCCAGAGTTTGCTTTATTGGATTCAGGGGCATTCAAAGTATCTCGGGAAGGTTATGTGCTGCTTCAGTTCGCTCCTGCAGTTGGTATGCGCCAGTATGACTGGAACAGAAAGCAGGTATTCTCTCTATCAGTGAGTGAAATGGGAAATGTAATTAGCCTTGGGGCAAGGGATTCGTGTGAATTTTTTCATGATCCTTTTAAGGGGAAGAGTGATGAAGATGTTCAGAACAAGATTGAGAACGTGGATGAAAGTATCTATATCCCTATTACAAAAGCAGAGCTATCAGTTTTCAACTCAATTTTCAATTTTATCATGCCATACCTTCTGGGCTGGCATGCGTTTGCAAATTCTATAAAACCAGAGGATCAAGGAAGATTGAATAACGCCAATCCAAGATATGGAGGAGACTTTGAATGGAGCAGATAG 549 0.4299 MHSFVSWFHLFARLVGALSPRVYVGHSVYKGKAALTVTPRPPEFALLDSGAFKVSREGYVLLQFAPAVGMRQYDWNRKQVFSLSVSEMGNVISLGARDSCEFFHDPFKGKSDEDVQNKIENVDESIYIPITKAELSVFNSIFNFIMPYLLGWHAFANSIKPEDQGRLNNANPRYGGDFEWSR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0629 182 Pfam Whirly transcription factor 28 115 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lele55g0629 182 Gene3D Transcriptional Coactivator Pc4; Chain A 14 114 IPR009044 GO:0003677|GO:0006355
Lele55g0629 182 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 114 182 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lele55g0629 182 Gene3D Transcriptional Coactivator Pc4; Chain A 115 162 IPR009044 GO:0003677|GO:0006355
Lele55g0629 182 SUPERFAMILY ssDNA-binding transcriptional regulator domain 19 182 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0629 Lele-ChrLele55 4109422 4111204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0629 19 182 Whirly Transcription Factor Family AT2G02740 65.775 3.09e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lele55g0629 Whirly 3.5e-38 CL0609