Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0628 ATGGCAGCTCTCAAACATCGGAGCCAAGGTCGTGGTTTGGTCCAAATGGACAGTACATCAGAGAGTTACCTTTGTCCAAGCTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGTGGAATTGAAAGATCAAGATCAGACTGTCCAAAGTGTGGTGGCAAGGGTATTGTTACTTGCCACCAGTGTTCAGGAGCTCGTATTACTTGGGAAGAATCAATTGATGAAAGACCATGGGAAAGAGCACGTTCCATTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGATAATTTGGACATAAAGCTGGATTTGAAGAAAAAATCGAAGCGCGTTTACCAGTCACCATCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTGAAAGATCTCAATGCAAAAACCGGTCTGTTTAGCAAGAGAATGAAGATTATCCATCGTGATCCCATGCTTCATGCGCAGAGAGTGGCTGCAATTAAGAAATCCAAGGGAACTGATGCAGCTAGAAAGCAAACCTCTGAAACTATGAAATCTTTCTTTAGTAATCCAGAAAATCGCCATAAAAGGAGCATTGCCATGAAAGGAGTGAATTTCTTCTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACACTACTGTCCAGAACTGAATGATAGTTCGGTGGATCGGCAATTCACGTGCCGGCTATGTGGGGAAAAAGGCCATAACAGAAGAACATGCAGCAAGTTAAGGATAAGCCATCGGAATGGCAGACCTGTAAAAATTTATTGCCGTAAAAATTGTCTTCAATATGGCCATAATCGCAGGACCTGCCCTCAACTAGTTGCTGCCTCCAAAACGACAGCTTCTCCAAGACCATACAAGTGTCGTTTGTGCCTCAAGAATGGCCACAATGTCAGGACATGTCCTACTACAAGAGCTATTAGTATTACTCAACATGCTCAAGATGAATAG 951 0.4374 MAALKHRSQGRGLVQMDSTSESYLCPSCRGRGYTPCTECGIERSRSDCPKCGGKGIVTCHQCSGARITWEESIDERPWERARSISPLKVKEDDEVDNLDIKLDLKKKSKRVYQSPSPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPMLHAQRVAAIKKSKGTDAARKQTSETMKSFFSNPENRHKRSIAMKGVNFFCQNCGREGHRRHYCPELNDSSVDRQFTCRLCGEKGHNRRTCSKLRISHRNGRPVKIYCRKNCLQYGHNRRTCPQLVAASKTTASPRPYKCRLCLKNGHNVRTCPTTRAISITQHAQDE 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0628 316 Gene3D - 254 313 - -
Lele55g0628 316 Gene3D - 190 242 - -
Lele55g0628 316 Pfam Zinc knuckle 283 303 IPR025829 -
Lele55g0628 316 MobiDBLite consensus disorder prediction 160 183 - -
Lele55g0628 316 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 31 240 - -
Lele55g0628 316 SUPERFAMILY Retrovirus zinc finger-like domains 196 242 IPR036875 GO:0003676|GO:0008270
Lele55g0628 316 SMART c2hcfinal6 287 303 IPR001878 GO:0003676|GO:0008270
Lele55g0628 316 SMART c2hcfinal6 225 241 IPR001878 GO:0003676|GO:0008270
Lele55g0628 316 SMART c2hcfinal6 255 272 IPR001878 GO:0003676|GO:0008270
Lele55g0628 316 SMART c2hcfinal6 198 214 IPR001878 GO:0003676|GO:0008270
Lele55g0628 316 ProSiteProfiles Zinc finger CCHC-type profile. 199 214 IPR001878 GO:0003676|GO:0008270
Lele55g0628 316 ProSiteProfiles Zinc finger CCHC-type profile. 226 241 IPR001878 GO:0003676|GO:0008270
Lele55g0628 316 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 20 70 IPR036410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0628 Lele-ChrLele55 4103382 4106508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0628 25 303 C2H2 Transcription Factor Family AT5G20220 62.847 4.90e-126 364