Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0625 ATGATGCAGGTGATGTTGTTTGGCGCCACAGACAGCTATGAAGGAGACGTCAATATGCAAATCACAGTGGCATTTAATCACTTTGGACAGGGATTAATCCAAAGGATGCCAAGGTGCAGGTGGGGTTTCGTTCATGTTGTTAACAATGACTACACTAATTGGGAAATGTACGCCATTGGCGGAAGCAAGCATCCTACCATCATCAGTGAGGGTAACAGATTCATAGCCCCGAATAACATATTTGCCAAAGAGGTGTGTAAGAGAGAGTACTCACCAGAGAGCGAGTGGAAGAACTGGCAATGGAGATCAATCAACGACCTACTCATGAACGGAGCTAATTTCACGCAATCTGGGATGCAGCTTCCAGTGTCGACGCGTGACATGCTCAAGGGCAAGCCTGGATCATGCGCCTCAAGTCTCACATGCTTTTCCGGAATCATCAAGTGCTATGTGGATAAGCCCTGCTAA 468 0.4701 MMQVMLFGATDSYEGDVNMQITVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTNWEMYAIGGSKHPTIISEGNRFIAPNNIFAKEVCKREYSPESEWKNWQWRSINDLLMNGANFTQSGMQLPVSTRDMLKGKPGSCASSLTCFSGIIKCYVDKPC 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0625 155 Gene3D - 2 148 IPR012334 -
Lele55g0625 155 Pfam Pectate lyase 3 74 IPR002022 -
Lele55g0625 155 PANTHER PECTATE LYASE 18-RELATED 3 152 IPR045032 GO:0030570
Lele55g0625 155 PRINTS Pollen allergen Amb family signature 35 54 IPR018082 -
Lele55g0625 155 PRINTS Pollen allergen Amb family signature 57 76 IPR018082 -
Lele55g0625 155 PRINTS Pollen allergen Amb family signature 99 123 IPR018082 -
Lele55g0625 155 SUPERFAMILY Pectin lyase-like 4 154 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0625 Lele-ChrLele55 4089697 4090360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0625 3 155 Polysaccharide Lyase AT4G24780 58.710 1.88e-59 187