LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g0621	ATGGGGTTGGTTGCTGATAATGGTAAGGTGGAGTCTTGGGATGTCAGCAAATCAAAGGGGAAGAAGAAGAAGAAGAAAGATGGTGGCGTTGTGGAAGAGGAAGAAACTGGGTGTTGGGTTGGGCTGAGGTTCATTGGCAGTTGCATTTCTTCGAGATCCAAGGTTGATAGCTCAGTTAGCAGCATCAGCACTCATTACGCTGAAAGTAAATTGACTATTGGTACAAGTAGAGATCAACCAACAGCTCCAGTAGTCTCTTCTACAACCACAAGTAACGCAGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTGCTTCCAGGCTGCGAAAGTTCTCATTTAATGATGTTAAGTTGGCAACAAGAAACTTCCGGCCAGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGTGTATTCAAGGGATGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGTACAGGGCTTACAGTTGCTGTAAAAACCCTCAATCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAGTTTTCTTGGTGATCTAATTCATCCTAACCTCGTTAAACTTATAGGCTACTGTATTGAAGATGATCAAAGGTTGCTAGTTTATGAATTCATGCCTCGGGGAAGCCTTGAGAACCACCTATTTAGGAGATCCCTGCCGCTTCCATGGTCCATCAGAATGAAAATTGCACTAGGAGCTGCAAAGGGTCTGGCATTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCCAATATACTATTGGATGCTGAGTACAATGCCAAACTTTCGGATTTTGGACTTGCCAAAGATGGTCCGGAGGGTGATAAAACCCATGTATCCACCCGGGTGATGGGAACCTATGGTTACGCAGCACCAGAATATGTAATGACAGGTCACCTTACATCAAAAAGTGATGTGTTCAGTTTTGGAGTAGTTCTTCTTGAGATGTTGACTGGCAGAAGATCGATGGACAAAAACCGACCCAATGGTGAACATAACCTTGTTGAATGGGCTCGTCCACATCTCGGAGAGAGAAGAAGGTTCTATAGGTTGGTAGATCCTCGGTTAGAAGGTCACTTTTCTATAAAAGGAGCTCAAAAAGCTGCCCAACTGGCTGCTCACTGCCTTAGCAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTTGTAGAAGCTCTAAAGCCTCTGCCAAACCTGAAGGACATGGCGAGCTCATCATATTATTTTCAGACGATGCAAGGCGACCGATTTGGTGCGAGCCCTACTACTCGAAATGGGCGAACACTGCTTACCCGGAATGGGCAGCAGCAGAGGAGCCTTTCTATACCTCATGGTACTCATGCTTCTCCTTATCACCACCAGTTTCCCCTACAATCCCCTAAACCTAATGGCAAAGCATAG	1443	0.4498	MGLVADNGKVESWDVSKSKGKKKKKKDGGVVEEEETGCWVGLRFIGSCISSRSKVDSSVSSISTHYAESKLTIGTSRDQPTAPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFSFNDVKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVSFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVFSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLVDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQGDRFGASPTTRNGRTLLTRNGQQQRSLSIPHGTHASPYHHQFPLQSPKPNGKA	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g0621	480	FunFam	Serine/threonine-protein kinase BIK1	94	212	-	-
	Lele55g0621	480	Pfam	Protein tyrosine and serine/threonine kinase	131	407	IPR001245	GO:0004672\|GO:0006468
	Lele55g0621	480	ProSitePatterns	Protein kinases ATP-binding region signature.	133	165	IPR017441	GO:0005524
	Lele55g0621	480	MobiDBLite	consensus disorder prediction	447	480	-	-
	Lele55g0621	480	CDD	STKc_IRAK	133	410	-	-
	Lele55g0621	480	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lele55g0621	480	MobiDBLite	consensus disorder prediction	73	99	-	-
	Lele55g0621	480	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	256	268	IPR008271	GO:0004672\|GO:0006468
	Lele55g0621	480	FunFam	Probable serine/threonine-protein kinase PBL8	213	427	-	-
	Lele55g0621	480	ProSiteProfiles	Protein kinase domain profile.	127	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele55g0621	480	PANTHER	OS01G0588500 PROTEIN-RELATED	92	410	-	-
	Lele55g0621	480	MobiDBLite	consensus disorder prediction	73	100	-	-
	Lele55g0621	480	SUPERFAMILY	Protein kinase-like (PK-like)	113	427	IPR011009	-
	Lele55g0621	480	Gene3D	Phosphorylase Kinase; domain 1	86	212	-	-
	Lele55g0621	480	Gene3D	Transferase(Phosphotransferase) domain 1	213	426	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g0621	Lele-ChrLele55	4064908	4068523	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g0621	96	407	Glycoside Hydrolase	AT3G07070	56.151	1.04e-117	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Lele55g0621		PK_Tyr_Ser-Thr	5.3e-46	CL0016