Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0616 ATGGAATCACAGTGGGGTCTGATAGACCAATCATTCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTATCATCACCGACCCCTCTATCTCTGGCCACCCGATTGTTTTTGTGAGCCATGGGTTCTTGAAAATGTCAGGTTATTCCAAAGAAGAGGTGATTGGTAAGAATGGTAGGATTTTTCAAGGACCAGGAACTTGTAGAAGATCGATAATAGAAATTCGTGAGGGTATAAGAGAAGAGAGACCCATTCAGATCAATTTGTTGAATTATCGTAAAGATGGCGAACCTTTTTGGATTTTATTTCACATGAGCCCTGTATTTAACAAGTATGATGGTAGTGTGAGTCACTTCGTGGCAGTTCAGGTACCTCTATCGAGGAAACGGAGGCGGTCGGGATGCGGCGTTAGGAGAACTGACGTTAATTTGAGTGACGATGGGTCTATGGCGCAGGATTTTGTATATGGATCATGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTTGGTCGTGTTTTGTCCCTTCATCAAGTGTCAGAAGTAGAACATGATGGTAGAGAACCAAATGGTGAAGAACCGTGTGAGGCAAGTGATGTTGATAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTGTGCTAACCCACTATAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATTCAGCATTTCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTGACATGCCTATTGTGTACGCCAGTGATGGCTTCTTGAAATTGACAGGTTACAAAAAAGATGAAGTGCTGGGTCGCAACTGTAGATTTCTAAGTGGACTGAATACTGATACCTCTGCTTTATATTTGATAAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATCAAAGCCCGTTTTGGAATTTTCTACACATTTCACCTATTCGTGATGCCTCTGGCAAGATAGCATATTTTGTGGGTGTTCAAATAGAAGAAGGCTGTAAGAACGAGCAAGGTAGGCAGGGTCGACTGAGCCCTGAGAAGATTCAGCTCAGCGTGGTAGGCGCAGTGAGGGTTGCTGTGAGGAGTTCATCATTGACTGCTGGATCTTCCAAGTCATCATGTACAGTATAA 1230 0.4309 MESQWGLIDQSFDSRYSCHVREALDELPDNFIITDPSISGHPIVFVSHGFLKMSGYSKEEVIGKNGRIFQGPGTCRRSIIEIREGIREERPIQINLLNYRKDGEPFWILFHMSPVFNKYDGSVSHFVAVQVPLSRKRRRSGCGVRRTDVNLSDDGSMAQDFVYGSCRKEVCSDSLLELGRVLSLHQVSEVEHDGREPNGEEPCEASDVDKRKAMTAMDNIFSVLTHYSELTGRLVCRKRFSISDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDGFLKLTGYKKDEVLGRNCRFLSGLNTDTSALYLIRESIKAEQPCTVRILNYRKDQSPFWNFLHISPIRDASGKIAYFVGVQIEEGCKNEQGRQGRLSPEKIQLSVVGAVRVAVRSSSLTAGSSKSSCTV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0616 409 CDD PAS 27 117 IPR000014 -
Lele55g0616 409 CDD PAS 271 360 IPR000014 -
Lele55g0616 409 SMART pas_2 250 323 IPR000014 -
Lele55g0616 409 SMART pas_2 18 87 IPR000014 -
Lele55g0616 409 Gene3D PAS domain 17 141 - -
Lele55g0616 409 ProSiteProfiles PAS repeat profile. 275 297 IPR000014 -
Lele55g0616 409 Pfam PAS domain 38 131 IPR000014 -
Lele55g0616 409 Pfam PAS domain 262 361 IPR000014 -
Lele55g0616 409 TIGRFAM sensory_box: PAS domain S-box protein 21 128 IPR000014 -
Lele55g0616 409 TIGRFAM sensory_box: PAS domain S-box protein 275 360 IPR000014 -
Lele55g0616 409 SMART pac_2 325 364 IPR001610 -
Lele55g0616 409 SMART pac_2 93 136 IPR001610 -
Lele55g0616 409 PANTHER PROTEIN TWIN LOV 1 4 396 - -
Lele55g0616 409 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 361 IPR035965 -
Lele55g0616 409 FunFam Protein TWIN LOV 1 isoform D 30 226 - -
Lele55g0616 409 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Lele55g0616 409 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Lele55g0616 409 Gene3D PAS domain 262 406 - -
Lele55g0616 409 FunFam protein TWIN LOV 1 262 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0616 Lele-ChrLele55 4031313 4034417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0616 248 386 AGC Kinase Gene Family AT5G58140 39.568 2.94e-29 118