Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0585 ATGGATCCGGCGGCTATCAATATGAAGAACGAGGGTTCGTTTGCGAATGGGAACGCCAATACGGCGTCGTATAACATGGCCGAGTTCTGGCAGTTCCCGGTCAACGCCGGTGCGGGTCTTGGGGAGTCCGGAGGCGGGTTGGGCTTGAGGAGGCCGCAGTTCGGACAAAATTTGGGGCAGATTGGCGATTTTACGTCGGGTCCGAACCCGAATGGCCCGGGTAATGATCCGAACTGTTCGGAACAACAGGGAGCGAATGGGTTCAATAGGAAGAAGCGCGATACCGAGGATGAATTGGCGAAAGGCGTCTCCGCCACCACCACCACCACCAACAACGGTGGCATTGGCAATAGCAATGGCGTGAATGATGGGGATGGAAAACGGCTTAAAGTATCAGGGAATAGGAATGAGAGCCATGAAACTAAAGCTGAAACAGAAACCAGTTCAGAAATGCCAGCTTCAGAGCCTCCTAAGCCAGCTTACATCCATGTACGAGCGAGAAGAGGTCAAGCTACTGATAGTCACAGTCTAGCGGAAAGAGCTAGGAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAGGAGCTGGTTCCTGGTTGTAACAAGGTTATTGGGAAAGCGTTGGTCCTCGATGAGATAATAAATTACATTCAGTCACTGCAGCACCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCTGTAAATTCAAGAGCCAACTCTGGCACTGAAATTTTTCCTCCTAAAGATTTTGGTCAACAGACATTTGACATGGCAATTGGTCCTCAAGCTCTGCGGGATCAGTTCAGCCGCGGTTCATCGCCGGAGTGGCTACACAAGCAGGTAGGAGGTGGATTTGAAAGAACATGA 867 0.4994 MDPAAINMKNEGSFANGNANTASYNMAEFWQFPVNAGAGLGESGGGLGLRRPQFGQNLGQIGDFTSGPNPNGPGNDPNCSEQQGANGFNRKKRDTEDELAKGVSATTTTTNNGGIGNSNGVNDGDGKRLKVSGNRNESHETKAETETSSEMPASEPPKPAYIHVRARRGQATDSHSLAERARREKISERMKILQELVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANSGTEIFPPKDFGQQTFDMAIGPQALRDQFSRGSSPEWLHKQVGGGFERT 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0585 288 FunFam Basic helix-loop-helix transcription factor 167 239 - -
Lele55g0585 288 Gene3D - 167 243 IPR036638 GO:0046983
Lele55g0585 288 SMART finulus 176 226 IPR011598 GO:0046983
Lele55g0585 288 MobiDBLite consensus disorder prediction 128 146 - -
Lele55g0585 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 236 IPR036638 GO:0046983
Lele55g0585 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Lele55g0585 288 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Lele55g0585 288 Coils Coil 217 237 - -
Lele55g0585 288 MobiDBLite consensus disorder prediction 58 86 - -
Lele55g0585 288 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 267 IPR024097 GO:0006355
Lele55g0585 288 MobiDBLite consensus disorder prediction 47 157 - -
Lele55g0585 288 MobiDBLite consensus disorder prediction 101 119 - -
Lele55g0585 288 CDD bHLH_AtBPE_like 161 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0585 Lele-ChrLele55 3817430 3819402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0585 1 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.172 3.42e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele55g0585 HLH 2.1e-08 No_clan