Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0571 ATGCCTGATTACGCATTACAATGGCTCACCTCCTGTGACACACATGAGGATTTGGTTCTTCGAAGGTCCAGAGACGATGGTTATATGAGCTCTCAACTTAAACGGCCCATGGTTTCTTCCCGAGGAGAAATATCGGGGCAGCCCCAGATGATGGCTGGAGGTGCTCAAAAACTCACAACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGAAATCTTTCAAGATAAAAGGGAAAAATATGACGAGTTTTTAGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGCGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCTTTGGAGGATGAACAACCTGTGCAAAAGAAGCCTGTTGAATTTGACGAAGCTATAAATTTTGTCAACAAAATTAAGTCTCGCTTTCAAGGTGATGACCATGTCTACAAGTCGTTTCTAGACATATTGAACATGTACAGAAAGGAAAACAAGTCTATTTCTGAGGTCTACCAGGAGGTTGCTTCACTTTTCCATGACCACCCAGATCTTCTTGATGAGTTTACTCACTTTCTTCCTGATACTTCAGCAACAGCATCCACGCATTATGCTCCTTCTCGGAACTCTATGCCTCGGGATAGGAGCTCTGCAGTGCCAAGGCAAATGAGTGTTGAAAAGAGAGAACGGACTGTGGATTCTCAAGGTGATCATGACCTCAGCATTGATCGTTCTGATCCATATCAAGAAAGAGTTATGATTAAGGCAGAAAAGGATCAGAGGAGGCTTGCTGAGAAGGAAAAGGACCTCAGAGAAGAGAAGGATAGGAGAGATCGGGAACGGGATGATAGAAATTATGGGCCTGATGGTAGCCAAGACTTTACCATGCCACGCTTCCCCCTCAAACGGAAATCTGGTCGTAGGACAGATGAGATTGGTGCTGAAACATTGCATCAAGGTGGCGATTCTGATGAAAATTTAAGCATGCGCCCTGTGTCATCCACCTGTGATGACAAAAGTACTGTGAAGAGTATGTATAGTCAAGAGTTTGCTTTTTGTGAAAAGGTCAAGGAGAAATTACGAAATCCTGATGTTTATCAAGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGGCAAGAATTGGAATCCTTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAAGGGTTTAATGAATTTTTGTCCAGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTAATGAATAAAAAGTCCTTTTGGAATGAAGGGATTGCAGCTAAAGCGGCAAAGATAGAGGACAAGGACAGAGATAGAGCTCGAGATCATGAAAGGGATGATCGGGCTAAAGAAAGAGATCGTGAACTACAAGAAAGGAATAAATCTTCTGCTTTTATTAGCAAGGACGTTTCAGGTCCTAAGATGTATCCATATTCCAGCAAGGATAAATATTACGGAAAACCTATAAATGAGCTAGACCTTTCTAACTGTGAGCAATGCACTCCCAGCTACCGTCTCCTACCAAAAAATGTACTCTTTACTTAG 1614 0.4201 MPDYALQWLTSCDTHEDLVLRRSRDDGYMSSQLKRPMVSSRGEISGQPQMMAGGAQKLTTNDALAYLKAVKEIFQDKREKYDEFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPVQKKPVEFDEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDTSATASTHYAPSRNSMPRDRSSAVPRQMSVEKRERTVDSQGDHDLSIDRSDPYQERVMIKAEKDQRRLAEKEKDLREEKDRRDRERDDRNYGPDGSQDFTMPRFPLKRKSGRRTDEIGAETLHQGGDSDENLSMRPVSSTCDDKSTVKSMYSQEFAFCEKVKEKLRNPDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNEFLSRCEKNDGFLAGVMNKKSFWNEGIAAKAAKIEDKDRDRARDHERDDRAKERDRELQERNKSSAFISKDVSGPKMYPYSSKDKYYGKPINELDLSNCEQCTPSYRLLPKNVLFT 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0571 537 Gene3D Paired amphipathic helix 62 124 IPR036600 GO:0006355
Lele55g0571 537 SUPERFAMILY PAH2 domain 140 211 IPR036600 GO:0006355
Lele55g0571 537 MobiDBLite consensus disorder prediction 330 349 - -
Lele55g0571 537 ProSiteProfiles PAH domain profile. 56 126 IPR003822 GO:0006355
Lele55g0571 537 FunFam Paired amphipathic helix protein SIN3 356 429 - -
Lele55g0571 537 ProSiteProfiles PAH domain profile. 142 212 IPR003822 GO:0006355
Lele55g0571 537 FunFam Paired amphipathic helix protein Sin3 62 124 - -
Lele55g0571 537 Gene3D Paired amphipathic helix 140 213 IPR036600 GO:0006355
Lele55g0571 537 MobiDBLite consensus disorder prediction 455 486 - -
Lele55g0571 537 MobiDBLite consensus disorder prediction 236 304 - -
Lele55g0571 537 SUPERFAMILY PAH2 domain 361 427 IPR036600 GO:0006355
Lele55g0571 537 MobiDBLite consensus disorder prediction 216 324 - -
Lele55g0571 537 Gene3D Paired amphipathic helix 356 429 IPR036600 GO:0006355
Lele55g0571 537 FunFam Paired amphipathic helix SIN3-like protein 141 212 - -
Lele55g0571 537 MobiDBLite consensus disorder prediction 216 233 - -
Lele55g0571 537 Coils Coil 269 299 - -
Lele55g0571 537 SUPERFAMILY PAH2 domain 56 125 IPR036600 GO:0006355
Lele55g0571 537 Pfam Paired amphipathic helix repeat 165 209 IPR003822 GO:0006355
Lele55g0571 537 Pfam Paired amphipathic helix repeat 79 123 IPR003822 GO:0006355
Lele55g0571 537 Pfam Paired amphipathic helix repeat 380 424 IPR003822 GO:0006355
Lele55g0571 537 MobiDBLite consensus disorder prediction 455 485 - -
Lele55g0571 537 PANTHER SIN3B-RELATED 56 533 IPR039774 GO:0003714
Lele55g0571 537 ProSiteProfiles PAH domain profile. 358 427 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0571 Lele-ChrLele55 3712720 3719840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0571 44 139 WRKY Transcription Factor Family AT4G12020 58.163 5.21e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele55g0571 PAH 1.8e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0905 53 18711309 18723602 Lele55g0571 55 3712720 3719840 hybridization
Lele54g0892 54 15448734 15457685 Lele55g0571 55 3712720 3719840 hybridization