Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0562 ATGGAGGTCTGTGATCTATTGCCGTCAGATTCCGAGGAGGTTCATGTCTTGGCCGTCGATGACAGCCTCATCGATCGGAAAGTCATCGAGCGCTTGCTCAGGATTTCAGCTTGTAAAGTCACTGCTGTGGACAGCGGAATAAGAGCTCTGCAATTCCTTGGACTCGACGACCAGAAATCTCCTTCCGAATTGGACGGCTTTGATGGCTTAAAGGTGGATCTAATCATCACTGACTACTGCATGCCTGGGATGACCGGCTATGAATTACTCAAGAAAATCAAGGAATCTTCCACCTTCAGAGAAATTCCAGTGGTGATCATGTCCTCTGAAAAGGTTTTGCCCCGAATAGACAGGTGTTTGGAAGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAGTTATCAGACGTGAAGCGGTTAAGGGATTACATGACGACAAGAGAAGTTAAGGCGGGAAGTCAGGAGAGAGAAGGCGAAAACGGCGTCAGGTTCACCAGAAGAAGGCTGACGGAATCCTCTGATCTGGATTCATCGCCGCCGTCCGTTACCTCCTCGTCATCTGCACTGTCATCGTCGCCGTCATCACCGTCGGATTTAGCCTCGTCGTCCCCGTCGCCGCCGTTGTCCCCCTCCCCTTCACCTTCACCTTCACCTTCGGCGCTCGATTCTCCGATCAGACGGCTTAGAATGACCACCACCGATTGA 705 0.5149 MEVCDLLPSDSEEVHVLAVDDSLIDRKVIERLLRISACKVTAVDSGIRALQFLGLDDQKSPSELDGFDGLKVDLIITDYCMPGMTGYELLKKIKESSTFREIPVVIMSSEKVLPRIDRCLEEGAEDFIVKPVKLSDVKRLRDYMTTREVKAGSQEREGENGVRFTRRRLTESSDLDSSPPSVTSSSSALSSSPSSPSDLASSSPSPPLSPSPSPSPSPSALDSPIRRLRMTTTD 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0562 234 CDD REC_typeA_ARR 16 140 - -
Lele55g0562 234 Gene3D - 14 197 - -
Lele55g0562 234 SMART REC_2 14 141 IPR001789 GO:0000160
Lele55g0562 234 MobiDBLite consensus disorder prediction 203 219 - -
Lele55g0562 234 Pfam Response regulator receiver domain 16 137 IPR001789 GO:0000160
Lele55g0562 234 MobiDBLite consensus disorder prediction 148 234 - -
Lele55g0562 234 ProSiteProfiles Response regulatory domain profile. 15 145 IPR001789 GO:0000160
Lele55g0562 234 SUPERFAMILY CheY-like 14 140 IPR011006 -
Lele55g0562 234 MobiDBLite consensus disorder prediction 174 202 - -
Lele55g0562 234 MobiDBLite consensus disorder prediction 148 173 - -
Lele55g0562 234 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 181 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0562 Lele-ChrLele55 3651483 3652538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0562 8 226 Response Regulator Gene Family AT1G59940 60.731 1.20e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele55g0562 Response_reg 6.6e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g0562 55 3651483 3652538 Lele56g0542 56 3980266 3981234 ECH
Lele55g0562 55 3651483 3652538 Lele55g0562 55 3651483 3652538 ECH
Lele53g0913 53 18776423 18777482 Lele55g0562 55 3651483 3652538 hybridization
Lele54g0898 54 15504165 15505186 Lele55g0562 55 3651483 3652538 hybridization