Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0555 ATGGAAAGAGAATATGGCTCTGATATTTCTCCTTCATGGGATAATGGTGAAAATGGCCATTCTTCTATGGAGAAGAGGCTAAGGTTATTTGGGTTTGAGCTGAACCCACCTCAGATCAACGAGGGCTCTGCCAAGGACTCTGTGGAAGGCGATGAAAGTGCAAACTCGTCAAACTCAGTTTCATCAGGAGGCGAGAAAACTGATGAACAGCAGGAGAAGAGCTCATCTGCAACAAGAGACAACAACACATCATCAGATCATGAGAGGAAGTTCGAGTGCCAATATTGTTCTAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCCCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAAGCCAGGAGGGCTAGCTTAAGCTATTACCTTCAGCCTTTTCATAACAACCCTGGTTTTTCCTTCGACGGCTCTAATACGGCTTGGTTCTATGATCCCTCTTCTTATAATAACTCTGAGTTTTCTTTGTACGAAGAACCTCAGATTAGCTTCAAAACCAATGATCAAGATGCCATTAATATTCTTAATGGTTTTGATCAGAAATCTAATTGGAATTCTCATCCATCCCTTTCCCTTCCTTCTCAACAAGATACTTGTATGTTCACTTTATCACATGCAGATCATAGGCCTTTCATCTTCCCTGCAGCTTCAAACCAGAGCCATAGTAATAAGGGTTTGGATCTTCAACTAGGCCTCACTTTGCAGTCAAATACACATATTTAG 759 0.4163 MEREYGSDISPSWDNGENGHSSMEKRLRLFGFELNPPQINEGSAKDSVEGDESANSSNSVSSGGEKTDEQQEKSSSATRDNNTSSDHERKFECQYCSKEFANSQALGGHQNAHKKERMKKKRLQLQARRASLSYYLQPFHNNPGFSFDGSNTAWFYDPSSYNNSEFSLYEEPQISFKTNDQDAINILNGFDQKSNWNSHPSLSLPSQQDTCMFTLSHADHRPFIFPAASNQSHSNKGLDLQLGLTLQSNTHI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0555 252 Gene3D Classic Zinc Finger 67 137 - -
Lele55g0555 252 MobiDBLite consensus disorder prediction 1 87 - -
Lele55g0555 252 MobiDBLite consensus disorder prediction 49 65 - -
Lele55g0555 252 Pfam C2H2-type zinc finger 91 116 - -
Lele55g0555 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Lele55g0555 252 SUPERFAMILY beta-beta-alpha zinc fingers 87 118 IPR036236 -
Lele55g0555 252 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Lele55g0555 252 PANTHER ZINC FINGER PROTEIN 5 20 247 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0555 Lele-ChrLele55 3596052 3596810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0555 26 129 C2H2 Transcription Factor Family AT1G68360 43.269 2.88e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g0555 zf-C2H2_6 2.8e-06 CL0361