Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0554 ATGCCGACGGATAGATCAAAATCGGAGAAGCGCGACACTGCGAAGCAGCTCCGGCGGGACCCTTATGAGGTTCTTGACGTCTCGCGGAACTCAACTGATCAAGAAATCAAAACTGCTTACCGGAAATTGGCACTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCAGCGGATATGTTCAAAGAGGCCACCTTTTCATATAATATATTGTCAGATCCTGAAAAACGCCTTCAGTACGACTCTTCTGGTTTTGAGGCTGTTGAATCAGATAACCAAGACTTGGAGTTGGATCTTTCGAGTTTAGGTGCTGTAAATACAATGTTTGCGGCACTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTATCAGCAACTGTTTTGGAAGAGGCACTTACTGGTGCCGTGATCATTCATCCACTTCCATTGGGGCTGCCTATATCTAAAAGGTTACTATATTTTGATCAAGAAGAGACTGGGGGACTAAGTCTTGTACTCCAGGAAGACAGTGCAAAAACAGGGAAGGTAACTTCTGCAGGAATTTATTTTCTTGGGTTTCCTGTTTATCAATTGGATCAAACCATGAATTCAACAGCTGCTGCTAAGGATCACGATGCATCGTTGTTCAGAAAGCTAGACGGGTTCCGACCTTGTGAATTAACAGAACTAAAGCCTGGTACTCATGTATTTGCCGTTTACGGTGACAATTTTTTCAGAAGTGCAAGCTACACTATAGAAGCTTCATGTGCTGCTCCTTTCAGACAAGAAAAAGAAAATCTCAGAAGCGTAGAAGCCCAAATTTTATCCAAAAGGGCGGCCCTAACGAAATTTGAGTCTGAATACCGAGAGATTGATGAGCTACTTAAGCAAAGGAATGAAATACGTGCATCATATACTGTTGCTCCATTAAAACGACGTAGGACAAAGAGGAGTAAAAGTTCTTCCAAGGAGGAAGGAGAAGATGGCCAAGCAAGAGAGAAGAGGCATACAAGGGAGAGACTGAGGAAGAAGAAATGGTATAACATCCACTTAAAAGCTGATAAGAGAAAAGCTTGCTAG 1065 0.4216 MPTDRSKSEKRDTAKQLRRDPYEVLDVSRNSTDQEIKTAYRKLALKYHPDKNANDPKAADMFKEATFSYNILSDPEKRLQYDSSGFEAVESDNQDLELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALTGAVIIHPLPLGLPISKRLLYFDQEETGGLSLVLQEDSAKTGKVTSAGIYFLGFPVYQLDQTMNSTAAAKDHDASLFRKLDGFRPCELTELKPGTHVFAVYGDNFFRSASYTIEASCAAPFRQEKENLRSVEAQILSKRAALTKFESEYREIDELLKQRNEIRASYTVAPLKRRRTKRSKSSSKEEGEDGQAREKRHTRERLRKKKWYNIHLKADKRKAC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0554 354 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Lele55g0554 354 SUPERFAMILY Chaperone J-domain 19 89 IPR036869 -
Lele55g0554 354 MobiDBLite consensus disorder prediction 314 330 - -
Lele55g0554 354 Gene3D DnaJ domain 4 103 IPR036869 -
Lele55g0554 354 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 151 - -
Lele55g0554 354 Pfam DnaJ domain 20 82 IPR001623 -
Lele55g0554 354 SMART dnaj_3 19 77 IPR001623 -
Lele55g0554 354 PRINTS DnaJ domain signature 40 55 IPR001623 -
Lele55g0554 354 PRINTS DnaJ domain signature 57 77 IPR001623 -
Lele55g0554 354 PRINTS DnaJ domain signature 77 96 IPR001623 -
Lele55g0554 354 PRINTS DnaJ domain signature 22 40 IPR001623 -
Lele55g0554 354 CDD DnaJ 20 74 IPR001623 -
Lele55g0554 354 MobiDBLite consensus disorder prediction 1 21 - -
Lele55g0554 354 MobiDBLite consensus disorder prediction 301 354 - -
Lele55g0554 354 FunFam Chaperone protein dnaJ 16 4 102 - -
Lele55g0554 354 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Lele55g0554 354 MobiDBLite consensus disorder prediction 331 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0554 Lele-ChrLele55 3581558 3584413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0554 13 83 C2H2 Transcription Factor Family AT1G74250 39.474 2.30e-10 60.1