Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0552 ATGATTCTTTACCGTTCCGCTTTGATGTTACATCTCCAAATACCATCAATTCGATCCCATTTCTTCTCCCATTTCAAGCATACATACTCCTTCCTCTCCACTTCTTCGCCTTCTTTGGTTAACTTTCCCTTCATTTCGCTTTCCCGTCCTCGCCAACGGCTATTCCGGGCGTTTGGGAGTACCGTCGTGGCGGTAGCAGATGCAAAAGGGAGAGACACATTCTTGGCGGAAGAAAATGTTTCGTGGAATTCACTTGGTCTGTCTGATGCCATTTCCCGAGCTCTCTCTGGTATTGGCCTCGATAGGCCATCTCTGGTCCAGGCTTCTTCTATACCATCTGTGCTTTCTGGAAAGGACATTGTTATTGCAGCAGAGACCGGCAGTGGTAAAACACACAGTTACCTAGTTCCTCTAATTGATAAGCTACGAGGTTCCAACAACAATTCTGAAAATACTGCCCATAATCAAAAAGAGTCTCTCTGTAAGATTCTGCTCGTTCTGTGTCCAAATGTACAACTGTGTGAGCAAGTAGTTCAAATGGCTAACAGTATTTGTGGGGACAATGGTGCATCCATCGTTAGTGTGGCAGCCATGTGTGGCAGACAGGGATGGCCAATTCATGAACCAGATATCATTGTGACAACACCTGTTGCTCTTCTAAACTATGTTGAAAAAAACAGAAATCGTCGAATGGAATTTATGCGCGGTGTTAAATATGTGGTATTTGATGAAGCCGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAATGATTCGTCTGATAAACTTGCTTCGCTTTGATGAAAAACTATTATCCCAATCAAAAGAACCAGCATCAGAGTTACCATCAGAGCTAGAATCTACCATGTCATCGCACAGTGTTATAGATGGTGAACATAAACAGCCCACTGAATACACTATATCAGAAGATGGGGATGATGATACCCATTCAGTTGACACCAGTAATGAAGCTGGTTCAATCAAAAGAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGAAGTAAGCAGTACATTTTTGTTGCAGCCACACTTCCTGTGAATGGGAAGAAAACAGCTGGAGCAATATTAAAGCATATGTTTCCTGATGCCGAGTGGGTTAGTGGAAATTATCTTCATTGTCACAATCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGATACACAGGTGGATGAACTCATAAAAGCTGTGAGACAAGGCTTCAGTCAAGATTTGGATAGTTTTGGCGGCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGATGCCGTTGACGCTGTGGCAAAGATATTGGTCAGATCTGGGATTGAATGTTTATGCTATCATAAGGATCGCTCCTTGGATGAGCGAGCTAGGGCCTTAGTCGAATTCCGAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTCTCACATGTTATCCAGGCAGATTTTGCTAGTTCTGCTGTAGACTTCTTGCATAGAGTTGGCAGAACTGGTCGAGCCGGTCAATTTGGACTTGTTACTAGCATGTACACTGAATCTAACAGGGAGCTTGTTGATGCGATTCGCCGAGCAGGGGAACTTGGTCGACCTGTGGAGAGAGCATTTAGCAGGAAAAGAAGTTTCCGTAACAAGATCAAGAAGAGGGCGGCAATCCTAGTCAGAGATTCAGCCATTGTTAAAGAGAGTGCTCTGGCTTGA 1737 0.4381 MILYRSALMLHLQIPSIRSHFFSHFKHTYSFLSTSSPSLVNFPFISLSRPRQRLFRAFGSTVVAVADAKGRDTFLAEENVSWNSLGLSDAISRALSGIGLDRPSLVQASSIPSVLSGKDIVIAAETGSGKTHSYLVPLIDKLRGSNNNSENTAHNQKESLCKILLVLCPNVQLCEQVVQMANSICGDNGASIVSVAAMCGRQGWPIHEPDIIVTTPVALLNYVEKNRNRRMEFMRGVKYVVFDEADMLLCGSFQNKMIRLINLLRFDEKLLSQSKEPASELPSELESTMSSHSVIDGEHKQPTEYTISEDGDDDTHSVDTSNEAGSIKRRDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWVEVTVDTQVDELIKAVRQGFSQDLDSFGGISRTMVFANTVDAVDAVAKILVRSGIECLCYHKDRSLDERARALVEFREKGGVLVCTDAAARGVDIPNVSHVIQADFASSAVDFLHRVGRTGRAGQFGLVTSMYTESNRELVDAIRRAGELGRPVERAFSRKRSFRNKIKKRAAILVRDSAIVKESALA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0552 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 370 IPR014001 -
Lele55g0552 578 MobiDBLite consensus disorder prediction 276 296 - -
Lele55g0552 578 MobiDBLite consensus disorder prediction 297 325 - -
Lele55g0552 578 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
Lele55g0552 578 Gene3D - 387 576 IPR027417 -
Lele55g0552 578 CDD DEADc 91 271 - -
Lele55g0552 578 MobiDBLite consensus disorder prediction 275 325 - -
Lele55g0552 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 566 IPR001650 -
Lele55g0552 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 526 IPR027417 -
Lele55g0552 578 CDD SF2_C_DEAD 386 523 - -
Lele55g0552 578 Gene3D - 64 368 IPR027417 -
Lele55g0552 578 Pfam DEAD/DEAH box helicase 106 270 IPR011545 GO:0003676|GO:0005524
Lele55g0552 578 SMART helicmild6 434 514 IPR001650 -
Lele55g0552 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Lele55g0552 578 SMART ultradead3 99 389 IPR014001 -
Lele55g0552 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 90 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0552 Lele-ChrLele55 3567596 3571555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0552 329 540 Eukaryotic Initiation Factors Gene Family AT5G11200 27.869 1.48e-14 74.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g0552 55 3567596 3571555 Lele49g1044 49 6718150 6720150 CCT
Lele55g0552 55 3567596 3571555 Lele50g1135 50 7525322 7527317 CCT
Lele55g0552 55 3567596 3571555 Lele51g1062 51 6835657 6837658 CCT
Lele55g0552 55 3567596 3571555 Lele52g1102 52 7470835 7472830 CCT
Lele53g0924 53 18863300 18867462 Lele55g0552 55 3567596 3571555 hybridization
Lele54g0906 54 15578332 15581044 Lele55g0552 55 3567596 3571555 hybridization