Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele55g0552 | ATGATTCTTTACCGTTCCGCTTTGATGTTACATCTCCAAATACCATCAATTCGATCCCATTTCTTCTCCCATTTCAAGCATACATACTCCTTCCTCTCCACTTCTTCGCCTTCTTTGGTTAACTTTCCCTTCATTTCGCTTTCCCGTCCTCGCCAACGGCTATTCCGGGCGTTTGGGAGTACCGTCGTGGCGGTAGCAGATGCAAAAGGGAGAGACACATTCTTGGCGGAAGAAAATGTTTCGTGGAATTCACTTGGTCTGTCTGATGCCATTTCCCGAGCTCTCTCTGGTATTGGCCTCGATAGGCCATCTCTGGTCCAGGCTTCTTCTATACCATCTGTGCTTTCTGGAAAGGACATTGTTATTGCAGCAGAGACCGGCAGTGGTAAAACACACAGTTACCTAGTTCCTCTAATTGATAAGCTACGAGGTTCCAACAACAATTCTGAAAATACTGCCCATAATCAAAAAGAGTCTCTCTGTAAGATTCTGCTCGTTCTGTGTCCAAATGTACAACTGTGTGAGCAAGTAGTTCAAATGGCTAACAGTATTTGTGGGGACAATGGTGCATCCATCGTTAGTGTGGCAGCCATGTGTGGCAGACAGGGATGGCCAATTCATGAACCAGATATCATTGTGACAACACCTGTTGCTCTTCTAAACTATGTTGAAAAAAACAGAAATCGTCGAATGGAATTTATGCGCGGTGTTAAATATGTGGTATTTGATGAAGCCGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAATGATTCGTCTGATAAACTTGCTTCGCTTTGATGAAAAACTATTATCCCAATCAAAAGAACCAGCATCAGAGTTACCATCAGAGCTAGAATCTACCATGTCATCGCACAGTGTTATAGATGGTGAACATAAACAGCCCACTGAATACACTATATCAGAAGATGGGGATGATGATACCCATTCAGTTGACACCAGTAATGAAGCTGGTTCAATCAAAAGAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGAAGTAAGCAGTACATTTTTGTTGCAGCCACACTTCCTGTGAATGGGAAGAAAACAGCTGGAGCAATATTAAAGCATATGTTTCCTGATGCCGAGTGGGTTAGTGGAAATTATCTTCATTGTCACAATCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGATACACAGGTGGATGAACTCATAAAAGCTGTGAGACAAGGCTTCAGTCAAGATTTGGATAGTTTTGGCGGCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGATGCCGTTGACGCTGTGGCAAAGATATTGGTCAGATCTGGGATTGAATGTTTATGCTATCATAAGGATCGCTCCTTGGATGAGCGAGCTAGGGCCTTAGTCGAATTCCGAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTCTCACATGTTATCCAGGCAGATTTTGCTAGTTCTGCTGTAGACTTCTTGCATAGAGTTGGCAGAACTGGTCGAGCCGGTCAATTTGGACTTGTTACTAGCATGTACACTGAATCTAACAGGGAGCTTGTTGATGCGATTCGCCGAGCAGGGGAACTTGGTCGACCTGTGGAGAGAGCATTTAGCAGGAAAAGAAGTTTCCGTAACAAGATCAAGAAGAGGGCGGCAATCCTAGTCAGAGATTCAGCCATTGTTAAAGAGAGTGCTCTGGCTTGA | 1737 | 0.4381 | MILYRSALMLHLQIPSIRSHFFSHFKHTYSFLSTSSPSLVNFPFISLSRPRQRLFRAFGSTVVAVADAKGRDTFLAEENVSWNSLGLSDAISRALSGIGLDRPSLVQASSIPSVLSGKDIVIAAETGSGKTHSYLVPLIDKLRGSNNNSENTAHNQKESLCKILLVLCPNVQLCEQVVQMANSICGDNGASIVSVAAMCGRQGWPIHEPDIIVTTPVALLNYVEKNRNRRMEFMRGVKYVVFDEADMLLCGSFQNKMIRLINLLRFDEKLLSQSKEPASELPSELESTMSSHSVIDGEHKQPTEYTISEDGDDDTHSVDTSNEAGSIKRRDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWVEVTVDTQVDELIKAVRQGFSQDLDSFGGISRTMVFANTVDAVDAVAKILVRSGIECLCYHKDRSLDERARALVEFREKGGVLVCTDAAARGVDIPNVSHVIQADFASSAVDFLHRVGRTGRAGQFGLVTSMYTESNRELVDAIRRAGELGRPVERAFSRKRSFRNKIKKRAAILVRDSAIVKESALA | 578 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele55g0552 | 578 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 111 | 370 | IPR014001 | - | |
Lele55g0552 | 578 | MobiDBLite | consensus disorder prediction | 276 | 296 | - | - | |
Lele55g0552 | 578 | MobiDBLite | consensus disorder prediction | 297 | 325 | - | - | |
Lele55g0552 | 578 | Pfam | Helicase conserved C-terminal domain | 421 | 514 | IPR001650 | - | |
Lele55g0552 | 578 | Gene3D | - | 387 | 576 | IPR027417 | - | |
Lele55g0552 | 578 | CDD | DEADc | 91 | 271 | - | - | |
Lele55g0552 | 578 | MobiDBLite | consensus disorder prediction | 275 | 325 | - | - | |
Lele55g0552 | 578 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 398 | 566 | IPR001650 | - | |
Lele55g0552 | 578 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 111 | 526 | IPR027417 | - | |
Lele55g0552 | 578 | CDD | SF2_C_DEAD | 386 | 523 | - | - | |
Lele55g0552 | 578 | Gene3D | - | 64 | 368 | IPR027417 | - | |
Lele55g0552 | 578 | Pfam | DEAD/DEAH box helicase | 106 | 270 | IPR011545 | GO:0003676|GO:0005524 | |
Lele55g0552 | 578 | SMART | helicmild6 | 434 | 514 | IPR001650 | - | |
Lele55g0552 | 578 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 80 | 108 | IPR014014 | GO:0003724 | |
Lele55g0552 | 578 | SMART | ultradead3 | 99 | 389 | IPR014001 | - | |
Lele55g0552 | 578 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 90 | 548 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele55g0552 | Lele-ChrLele55 | 3567596 | 3571555 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele55g0552 | 329 | 540 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 27.869 | 1.48e-14 | 74.3 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele55g0552 | 55 | 3567596 | 3571555 | Lele49g1044 | 49 | 6718150 | 6720150 | CCT | |
Lele55g0552 | 55 | 3567596 | 3571555 | Lele50g1135 | 50 | 7525322 | 7527317 | CCT | |
Lele55g0552 | 55 | 3567596 | 3571555 | Lele51g1062 | 51 | 6835657 | 6837658 | CCT | |
Lele55g0552 | 55 | 3567596 | 3571555 | Lele52g1102 | 52 | 7470835 | 7472830 | CCT | |
Lele53g0924 | 53 | 18863300 | 18867462 | Lele55g0552 | 55 | 3567596 | 3571555 | hybridization | |
Lele54g0906 | 54 | 15578332 | 15581044 | Lele55g0552 | 55 | 3567596 | 3571555 | hybridization |