Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0539 ATGCCATTTGGGTTGGTCTCAGCCTGGAGCAAGCGTCGCAGAAGCAAGTCTCAAGATCATACAGACCCCTGGATTTACAAACCTCTGGAGTTTTGGCAACTTGAAGATCAAGCAACGAGGCCCACAAAAAGGCACCATGGTTCATCTGTATACACACTCAAGGAGATGGAAGAGGCAACAGGATCATTCAGTGATGATAATCTACTTGGAAAGGGAGGATTTGGCAGAGTCTACAGAGGCACTTTGCGTTCTGGAGAGGTTGTAGCAATCAAGAAAATGGATCTGCCAGCAATTAAAGAAGCAGAAGGAGAGCGCGAGTTCCGTGTTGAAGTTGACATCTTGAGCAGACTTGGCCACCCGAATCTTGTTTCTTTAATAGGCTATTGTGCTGATGGAAAGCAGCGGTTCCTAGTATATGAATATATGCATAATGGGAACCTGCAAGATCATTTGAATGGAATTGGGCAAAGAAAAATGGATTGGCCTCAAAGACTCAAAGTAGGACTGGGAGGAGCAAGAGGACTGGCATATCTCCATTCAAGTTCTGCTGTTGGAATTCCTATTGTTCACAGAGACTTCAAATCCACCAATGTTCTCTTAAATGTCAATTTTGAAGCTAAGATATCTGATTTTGGGCTAGCTAAGTTAATGCCAAAAGGACAGGAGACACATGTGACCGCCAGAGTGCTCGGTACATTTGGTTACTTCGATCCTGAGTATACATCGACGGGGAAACTCACTCTACTAAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTTGAGCTTTTGACAGGACGTCGAGCTGTAGATTTAAACCAAGGTCCAAATGATCAAAACCTTGTATTACAGGTTAGGAACATACTGAATGACCGCAAGAGGCTGCGCAAGGTGATAGACCCAGAAATGGCTCGAAATTCTTATACCATCGAGTCCATAGCTATGTTTGGCAATCTTGCATCACGATGTATACGTGTTGACAGTAGTGAGAGACCTTCTATGGCAGAATGTGTAAAAGAGCTGCAAATGATTATCTATACTAATTCAAAAGGGTTGGCAATGGTTATGCATAGTTTGAGAATGATCTAG 1086 0.43 MPFGLVSAWSKRRRSKSQDHTDPWIYKPLEFWQLEDQATRPTKRHHGSSVYTLKEMEEATGSFSDDNLLGKGGFGRVYRGTLRSGEVVAIKKMDLPAIKEAEGEREFRVEVDILSRLGHPNLVSLIGYCADGKQRFLVYEYMHNGNLQDHLNGIGQRKMDWPQRLKVGLGGARGLAYLHSSSAVGIPIVHRDFKSTNVLLNVNFEAKISDFGLAKLMPKGQETHVTARVLGTFGYFDPEYTSTGKLTLLSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRNILNDRKRLRKVIDPEMARNSYTIESIAMFGNLASRCIRVDSSERPSMAECVKELQMIIYTNSKGLAMVMHSLRMI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0539 361 CDD STKc_IRAK 69 341 - -
Lele55g0539 361 FunFam receptor-like serine/threonine-protein kinase NCRK 142 352 - -
Lele55g0539 361 PANTHER OS01G0750732 PROTEIN 33 345 - -
Lele55g0539 361 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Lele55g0539 361 ProSiteProfiles Protein kinase domain profile. 63 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0539 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Lele55g0539 361 Pfam Protein kinase domain 64 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0539 361 SUPERFAMILY Protein kinase-like (PK-like) 49 349 IPR011009 -
Lele55g0539 361 Gene3D Transferase(Phosphotransferase) domain 1 142 355 - -
Lele55g0539 361 FunFam serine/threonine-protein kinase PBS1-like 32 141 - -
Lele55g0539 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lele55g0539 361 PIRSF ILK 32 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0539 Lele-ChrLele55 3483986 3486426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0539 46 344 Receptor kinase-like Gene Family AT3G58690 44.408 2.85e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Lele55g0539 Pkinase 9.6e-48 CL0016