Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0530 ATGCCATATTCTGCAATGTCTTCTTGGATTCACTATCAAATTCTGCAGAATAATGGTGACATGGCTGGGCAGTCTATTCTTTCTCCATCACCTTCTCCTCCATCGCCTTACACTTCTAACTTCCAGAAGCAAATAAGCCCGCCTCCAGTTTCTTCATCTGGGAACAAAATAAGTCCTGCAGTTCTTTTTATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCGTCTTCATCAATTTCTCAATCCAATAGATACCCAGATATGTCTGAATCAGATACTTACCAGAGGCAGTTACAGCAGCTGTTTCATCTTCATGATTCAGGACTGGATCAGCCTTTTATAGATGCTCTTCCTGTCTTCTTTTACAAGGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTTTGTGAATTCTCAGATCTTGACAAGTTGAGGTTGCTGCCCATGTGCAACCATGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTATGCACCAGGGTTTCCCTTTGAAAACCCAGGTTTTGATTTTGAAGAGCCAAGAAGGGAAGAAGATGGGATTTCAGCAGGCGCTGTTGGAGCTGATTCTGCTTCTTTTCACAAACATGCAGAAAATCACATTATGAGCGGAAGAAGGGTGTTTTCTGTGAGACTTGGAAAATTTAGAAGCTCAAATACAAGACAAGGAGTAGGAAAATGTGAAGGAGAGAGTAGTGCGAGTAGTAGTAATTTGGATGCAAGGAGATGTTATTCAATGGGGTCTTTCCAGTATGTGGTTGCTGATTCAGATTTAAGAGTAGCTTTATGCCCTAATAGGGGTGATGTGAGCAGTAGCAGCATGAGACAGTTGAAAGTGCGAGTAGCTCAAATTGGGAATAATCCTTCCTCTGATTCTGACTTTGAGGGCAAAAAACTCAACATTGCGAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTAACCCATATGGGAAATTCTACTAATATCACTGCAAATTTGCCTTGGATGAATAGAACTAGAGTTAACCATAAAGTATGGGTTCAAAGTGAAAAAGCTGATGTGAAAAGAGGATGGAAGAAGATGGAGGGGCCTGAGAGTTTGTCACCATTGAAGTGTGGCGGGGCCACCTCACAACTGTGCTGTGTCAACACCGGCGGCTTCTCCGCAAAAAGACACAACGCTTAG 1317 0.4184 MPYSAMSSWIHYQILQNNGDMAGQSILSPSPSPPSPYTSNFQKQISPPPVSSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDMSESDTYQRQLQQLFHLHDSGLDQPFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDLDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFPFENPGFDFEEPRREEDGISAGAVGADSASFHKHAENHIMSGRRVFSVRLGKFRSSNTRQGVGKCEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDVSSSSMRQLKVRVAQIGNNPSSDSDFEGKKLNIARKGESFSVSKIWLWSKKDKLPSSSVTHMGNSTNITANLPWMNRTRVNHKVWVQSEKADVKRGWKKMEGPESLSPLKCGGATSQLCCVNTGGFSAKRHNA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0530 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 351 - -
Lele55g0530 438 FunFam RING-H2 finger protein ATL46 111 196 - -
Lele55g0530 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 196 IPR013083 -
Lele55g0530 438 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Lele55g0530 438 SUPERFAMILY RING/U-box 128 197 - -
Lele55g0530 438 Pfam Ring finger domain 148 191 IPR001841 -
Lele55g0530 438 CDD RING-H2_PA-TM-RING 148 191 - -
Lele55g0530 438 SMART ring_2 149 190 IPR001841 -
Lele55g0530 438 MobiDBLite consensus disorder prediction 23 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0530 Lele-ChrLele55 3421353 3424640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0530 50 364 C3H Transcription Factor Family AT2G18650 39.826 9.73e-57 191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1067 49 6891500 6903570 Lele55g0530 55 3421353 3424640 CCT
Lele50g1155 50 7756382 7775005 Lele55g0530 55 3421353 3424640 CCT
Lele51g1081 51 6986263 6998566 Lele55g0530 55 3421353 3424640 CCT
Lele55g0530 55 3421353 3424640 Lele56g0517 56 3782881 3784437 ECH
Lele55g0530 55 3421353 3424640 Lele55g0530 55 3421353 3424640 ECH
Lele53g0943 53 19049987 19051536 Lele55g0530 55 3421353 3424640 hybridization
Lele54g0924 54 15701206 15702746 Lele55g0530 55 3421353 3424640 hybridization