Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0526 ATGGGTAGGAACCTGTTCGTGTTGGGTCTTACGGTTCTGGTTTTATTTGCCGGCGTCACATCCGCAGCTTCTACTACTTCCCCTGCGAAGATTGTTAGTGGATTTCTCTCAAATGCTGTGCCTGCATTCACGAAATGGCTGTGGTCCCTCAAAGCTACGACCAAAACAGCGGTTTCTGGCCGGCAGATGATGAAGTTTGAGGGTGGATACACTGTGGAGACTGTGTTTGATGGAAGCAAGCTTGGAATCGAGCCTTATGCTGTTGAGCTGCTACCCAATGGAGAGCTTATGATTCTAGATTCAGCTAATAGTAACCTTTACAGGATTTCTTCCTCACTTTCTCTGTATAGTAGACCGAGGCTGATAGCAGGATCTGCTGAAGGATACTCTGGACATGTTGATGGGAAGGTCAGGGAGGCCAGGATGAACCACCCAAAGGGAATAACAGTTGATGATCGAGGAAATATCTACGTGGCAGATACTATGAATATGGCAATTAGGAAAATCAGCGATTCAGGGGTCACAACAATTGCTGGAGGAAAATGGAGCCGTGGAGGAGGCCATGTTGATGGGCCAAGTGAAGAAGCTAAATTTTCTAATGACTTTGATGTGGTTTATGTCGGAAGTAGCTGTTCTCTTCTTGTCATAGACAGAGGAAACCAAGCCATCAGAGAGATTCAGCTCCATTTTGATGACTGTGCTTATCAATATGGAAGTGGGTTTCCACTAGGGATTGCAATGCTGGTTGGGGCTGGCTTCTTTGGCTATATGTTGGCATTGGTGCAACGAAGGCTTGGTACAATTGTAGCATCCCAGAATGATGAAAGTCCAACAATGGCCGGAATTTCTCCAAGTCCATACAAGAAGCCCTTGAAATCTGTCAGGCCTCCTTTAATTCCATCTGAAAACGAACCTGAGAAGCAAGAAGAGGGTTTCTTTGGATCTCTGGGGAAGCTTCTTGCCAATGCTGGGGCATCAATGGTGGAGATTATGGGAGGATTATTTCCTGGTTTAAGAAAAAAACCAGCAATCTATCATTTTCAGAGCCAGCCATTGCTCCATCAACCGCAAAAGCACACGAATGCTTGGCCTTTGCAGGAAAGTTTCGTAATTCCTGATGAAGATGAGCCACCTTCAATTGATACTAGAGCCCCGACCCCTCGAAAAACCTATCCTTTCATGTCCAAGGATGCTGAAAAAATGCAACAACTTCGCCAAAGCCGAGCCTTCTACAGTGGATGGGATGGAGATATTCAGCAGCAGCAGCAACATCAACAACACCAGCAGCAACAGAAACATCATCATCGCCATGAGTACAGGTCATCAATCCCCCATACCTACTACGAGCAAAGCAACGAGACAACAAACGAGATTGTATTCGGGGCCGTGCAGGAGCAAAACGCGAATAAGGAATCCGTTGTAATCAAGCCTGTGGATTATGGCGAGTCATTGTATGATCATCACAACATCCGATCTAGAATCAATTACATGAGATATCCCCCCAGGTATTGA 1512 0.4583 MGRNLFVLGLTVLVLFAGVTSAASTTSPAKIVSGFLSNAVPAFTKWLWSLKATTKTAVSGRQMMKFEGGYTVETVFDGSKLGIEPYAVELLPNGELMILDSANSNLYRISSSLSLYSRPRLIAGSAEGYSGHVDGKVREARMNHPKGITVDDRGNIYVADTMNMAIRKISDSGVTTIAGGKWSRGGGHVDGPSEEAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSGFPLGIAMLVGAGFFGYMLALVQRRLGTIVASQNDESPTMAGISPSPYKKPLKSVRPPLIPSENEPEKQEEGFFGSLGKLLANAGASMVEIMGGLFPGLRKKPAIYHFQSQPLLHQPQKHTNAWPLQESFVIPDEDEPPSIDTRAPTPRKTYPFMSKDAEKMQQLRQSRAFYSGWDGDIQQQQQHQQHQQQQKHHHRHEYRSSIPHTYYEQSNETTNEIVFGAVQEQNANKESVVIKPVDYGESLYDHHNIRSRINYMRYPPRY 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0526 503 Pfam NHL repeat 143 168 IPR001258 GO:0005515
Lele55g0526 503 Gene3D - 27 227 IPR011042 -
Lele55g0526 503 PANTHER - 29 500 - -
Lele55g0526 503 MobiDBLite consensus disorder prediction 370 391 - -
Lele55g0526 503 MobiDBLite consensus disorder prediction 417 439 - -
Lele55g0526 503 SUPERFAMILY NHL repeat 71 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0526 Lele-ChrLele55 3388473 3391606 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g0526 55 3388473 3391606 Lele49g1067 49 6891500 6903570 CCT
Lele55g0526 55 3388473 3391606 Lele50g1155 50 7756382 7775005 CCT
Lele55g0526 55 3388473 3391606 Lele51g1081 51 6986263 6998566 CCT
Lele53g0947 53 19081400 19084984 Lele55g0526 55 3388473 3391606 hybridization
Lele54g0927 54 15726146 15728792 Lele55g0526 55 3388473 3391606 hybridization