Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0519 ATGGCTTCATCGATGAGGATCTCAAAGCTGCTCTCTCGCTCTCTCGCTTCTTCTGCTTCTTTGTTTGCTCGAGGAGGTGGGAATGGTTACTTGGGCAGAGGAGTGAGTAAATACAGTACGGCTTCCGCTTCTGCTCTTGAAGAACCGATTAAGCCGTCGATTCAAGTGGAACACACTCAGCTCCTAATCGGTGGAAAATTCGTGGATGCTGCTTCTGGCAAAACTTTTCCAACGTTGGACCCCAGGACAGGGGAAGCAATTGCACATGTTGCTGAAGGTGACTCTGAAGATGTAGATCGAGCAGTTGTAGCTGCACGCAAGGCATTTGATGAAGGGCCTTGGCCAAGAATGACAGCCTATGAAAGACAAAAGATATTGTTGCGTGCTGCTGATCTTATTGAGAAGCATAACGATGAGCTTGCTACGCTTGAGACGTGGGATAACGGGAAGCCATATGCCCAAGCTGCTCAAATTGAAGTTCCAATGCTAGTTCGTCTAATTCGATACTATGCTGGTTGGACTGATAAGATTCATGGCCTCACAGTTCCTGCTGATGGACCACATCATGTGCAAACATTGCATGAACCAATTGGTGTTGCCGGTCAGATCATTCCCTGGAACTTCCCTCTTCTCATGTTTGCATGGAAGGTTGGGCCAGCGTTGGCATGTGGCAACACTGTCGTTTTGAAAACAGCTGAACAAACGCCATTATCTGCCTTATATGCAGCAAAGCTATTCCATGAGGCTGGGCTTCCTTCTGGTGTTTTAAATATTATATCTGGCTTTGGTCCAACCGCTGGTGCTGCTGTTGCTAGTCACATGGATATTGACAAGGTTGCTTTTACTGGATCCACTGATACTGGAAAAATCGTCCTTGAAATGGCAGCAAAAAGTAATCTCAAGACAGTAACTTTGGAACTTGGAGGGAAATCCCCCTTCATTGTATGTGGAGATGCTGATGTAGATCTAGCTGTAGAGCAAGCACACTTTGCATTATTCTTTAATCAGGGACAATGCTGCTGTGCTGGGTCTCGTACATTTGTACATGAAAGTATATATGATGAATTCGTTGAAAAAGCAAAGGCACGTGCCTTGAAACGTGTTGTTGGTGATCCATTCAAGGGAGGAATAGAGCAAGGTCCTCAGATTGATTCTGAACAATTTGAGAAGATACTGAAGTATATAAGATCTGGTGTTGAAAGTGGAGCCGCTCTAGAAACTGGAGGAGAGAGACTAGGAGATGCAGGCTTCTATATCAAGCCCACTGTGTTTACAAATGTTCAGGACAATATGGCGATTGCGAAGGAAGAGATATTTGGCCCTGTGCAATCGATTTTGAAATTCAAGGACCTCGATGAAGTGATTCGAAGAGCAAACAATTCTCGCTATGGCCTTGCCGCTGGGGTATTCACGAAAAACATAGCCACAGCGAACACTCTGTCTCGAGCACTGCGAGTTGGGACAGTGTGGGTAAATTGCTTTGATACATTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGTGGTCAAGGCAGAGAAAAAGGGATTTACAGTCTTAAAAATTACTTGCAAGTGAAGGCCGTTGTTACTCCCTTGGAGAACCCAGCATGGCTTTGA 1620 0.4525 MASSMRISKLLSRSLASSASLFARGGGNGYLGRGVSKYSTASASALEEPIKPSIQVEHTQLLIGGKFVDAASGKTFPTLDPRTGEAIAHVAEGDSEDVDRAVVAARKAFDEGPWPRMTAYERQKILLRAADLIEKHNDELATLETWDNGKPYAQAAQIEVPMLVRLIRYYAGWTDKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYAAKLFHEAGLPSGVLNIISGFGPTAGAAVASHMDIDKVAFTGSTDTGKIVLEMAAKSNLKTVTLELGGKSPFIVCGDADVDLAVEQAHFALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRVVGDPFKGGIEQGPQIDSEQFEKILKYIRSGVESGAALETGGERLGDAGFYIKPTVFTNVQDNMAIAKEEIFGPVQSILKFKDLDEVIRRANNSRYGLAAGVFTKNIATANTLSRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGIYSLKNYLQVKAVVTPLENPAWL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0519 539 CDD ALDH_F2BC 56 531 - -
Lele55g0519 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Lele55g0519 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 43 529 - -
Lele55g0519 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Lele55g0519 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 73 529 IPR016162 GO:0016491
Lele55g0519 539 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 333 - -
Lele55g0519 539 FunFam Mitochondrial aldehyde dehydrogenase 2 311 500 - -
Lele55g0519 539 Pfam Aldehyde dehydrogenase family 67 529 IPR015590 GO:0016491
Lele55g0519 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Lele55g0519 539 FunFam Aldehyde dehydrogenase, putative 501 527 - -
Lele55g0519 539 SUPERFAMILY ALDH-like 54 533 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0519 Lele-ChrLele55 3314740 3318743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0519 3 539 Aldehyde Dehydrogenase Gene Family AT3G48000 75.465 0.0 866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1104 52 7496288 7503979 Lele55g0519 55 3314740 3318743 CCT
Lele49g1058 49 6809220 6811304 Lele55g0519 55 3314740 3318743 CCT
Lele50g1144 50 7640059 7641597 Lele55g0519 55 3314740 3318743 CCT
Lele51g1070 51 6905409 6907493 Lele55g0519 55 3314740 3318743 CCT
Lele55g0519 55 3314740 3318743 Lele56g0505 56 3692020 3697252 ECH
Lele55g0519 55 3314740 3318743 Lele55g0519 55 3314740 3318743 ECH
Lele53g0954 53 19154958 19158988 Lele55g0519 55 3314740 3318743 hybridization
Lele54g0934 54 15783285 15789403 Lele55g0519 55 3314740 3318743 hybridization