Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0488 ATGGAAGAAATCTACGGAGCGCCTTTGTCGGCGGACTATTCTGACAAGGCCTTGATGACGCCGGAGAACCTCATATTCGCCGCTGATTACCAGAGTTTTCTCCCGTCCTCCTCCGGCGGCTTCCATGATCGGAATCCGATGTTCGGATCCGACGACTTGCTTTCTGCCATTACCGAAGCTGAGCCGTCGTCTGTTGCCCCTGAAATTCAACCTGAAGACGATACCTCCCTTCTCATCAAAGCTAAAATCTCTTCTCATCCTCACTACCCTCGTCTCCTCCAAGCTTTCATCGATTGTCAGAAGGTAGGAGCGCCTCCAGAAATAGCGGGTCTGTTAGATGAAATCCAGCGAGAGAACGATGTTTGTGAGCGAGAGGTTGTTTCCACGTGCTTCGGTGATGATCCCGAGCTCGACGAGTTCATGGAAACCTATTGCGATCTTCTGATAAAGTATAAATCTGACCTTTCCCGGCCTTTTGACGAAGCAACCACTTTCCTCAACGAGATCGAAATACAGCTCAGCCATCTCTGCTCTGGTGCTTACGTTCCAACCCTTTCCGTCGTGTTGTATTGCTTGGATTTTGGAATTTGGAAAGGAGAAACTCACGATGAGAGGTTCCTTGAGTCTTGGGATGCGCGTGGTCAGGGCTCTGAGCTTTCTGGTATTGGATTGGATGATGGAGGCGGGTCTTCAGAAGAAGATATAAGCGCAGGAGATGGGGACGCACAAGATGGTGGATTGCGTGGGGAAGATCGAGAGCTGAAGGATAGGCTCTTAAATAAGTTTGGGGGTCGGATTAGTAGTTTGAAATTGGAGTTCTCGAAGAAGAAGAAGAAGGGCAAGCTTCCTAAGGAAGCCAGGCAAACCCTCCTTGACTGGTGGAGTGTTCACTGCCAATGGCCTTACCCTACGGAAGCTGATAAGATAGCACTGGCAAAGTCGACGGGGCTACATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGGAAGCGTCACTGGAAACCGTCGGAGAATCTGCAGTTCTCTGTTAGGGATACTCGAATCGGAGGCTTCTACTCCGATCATCATCTCAATGATTTGCTCAGCATGGGTCAGCATCGCATATGGAAGCGAATGGCGGTGTCTTGGAGTGGATTGAAAATGGGAGACCGTGCATTGGATGTGTGCTGTGGAAGTGGGGATTTAACGTTTCTATTGTCTGAGAAAGTTGGGTCCAATGCCGAGGTGACTGGTCTTGACTTCTCAAATAAGCAATTGTCGATTGCTTCATCTCGGCAGAAGTTGCTTTCAAAGGACTACTTCAGCGGTGACAATTCATTGCTTGGCAGATGGGTAGAAGGTGATGCTCTTGACTTGCCATTTACTGATGGTTTATTTGATGCTATAACCATGGGTTATGGTCTGCGAAATGTGGTCGATAGGCGCAAGGCCATGCAAGAATTATTACGAGTTCTAAAAGCCGGCTCCCGAGTGTCCATCCTTGACTTTAACAAGAGCGATCAGTTTTTGACTGCTTCAGCTATGGAAGGGATGATTGACAACGTTGTTGTCCCAGTGGCTTCTGGTTATGGCCTCTACGAAGAGTATAGATATCTAAAAAGCTCAATCAGAGAGTTTTTGACAGGGAGGCTTTATGGGCTGCCTGGTAGCAAAGCGTTAGATGGGATTTTATTTCTGGATTCTTATTCCAGTGCATATGTATTTATTTATTATTCTGGCACAGTCTGTGTTTGTTTGGGTTATTACATAGAATCTGCGCTTAATTTAAATTCTCCACTAGTTATCACAAATTCTGTGTTGCCTGACATTCTGAAGTTTACTGAATGTAACAATGTTCCAGGCAATGCAGCGTACAAAATTCTTGTTTCTTTTTCTTGTTTTGTCTCTCTCAATTAA 1899 0.4602 MEEIYGAPLSADYSDKALMTPENLIFAADYQSFLPSSSGGFHDRNPMFGSDDLLSAITEAEPSSVAPEIQPEDDTSLLIKAKISSHPHYPRLLQAFIDCQKVGAPPEIAGLLDEIQRENDVCEREVVSTCFGDDPELDEFMETYCDLLIKYKSDLSRPFDEATTFLNEIEIQLSHLCSGAYVPTLSVVLYCLDFGIWKGETHDERFLESWDARGQGSELSGIGLDDGGGSSEEDISAGDGDAQDGGLRGEDRELKDRLLNKFGGRISSLKLEFSKKKKKGKLPKEARQTLLDWWSVHCQWPYPTEADKIALAKSTGLHQKQINNWFINQRKRHWKPSENLQFSVRDTRIGGFYSDHHLNDLLSMGQHRIWKRMAVSWSGLKMGDRALDVCCGSGDLTFLLSEKVGSNAEVTGLDFSNKQLSIASSRQKLLSKDYFSGDNSLLGRWVEGDALDLPFTDGLFDAITMGYGLRNVVDRRKAMQELLRVLKAGSRVSILDFNKSDQFLTASAMEGMIDNVVVPVASGYGLYEEYRYLKSSIREFLTGRLYGLPGSKALDGILFLDSYSSAYVFIYYSGTVCVCLGYYIESALNLNSPLVITNSVLPDILKFTECNNVPGNAAYKILVSFSCFVSLN 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0488 632 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Lele55g0488 632 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
Lele55g0488 632 Pfam ubiE/COQ5 methyltransferase family 357 540 IPR004033 GO:0008168
Lele55g0488 632 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Lele55g0488 632 SMART ELK_2 253 274 IPR005539 GO:0003677
Lele55g0488 632 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Lele55g0488 632 SMART HOX_1 275 340 IPR001356 GO:0003677
Lele55g0488 632 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
Lele55g0488 632 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 342 - -
Lele55g0488 632 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 348 520 IPR029063 -
Lele55g0488 632 CDD AdoMet_MTases 385 494 - -
Lele55g0488 632 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Lele55g0488 632 TIGRFAM MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 357 542 IPR004033 GO:0008168
Lele55g0488 632 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Lele55g0488 632 Gene3D Vaccinia Virus protein VP39 355 546 IPR029063 -
Lele55g0488 632 ProSiteProfiles UbiE family SAM-binding methyltransferase profile. 335 583 IPR004033 GO:0008168
Lele55g0488 632 CDD homeodomain 285 337 IPR001356 GO:0003677
Lele55g0488 632 Pfam ELK domain 253 274 IPR005539 GO:0003677
Lele55g0488 632 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Lele55g0488 632 MobiDBLite consensus disorder prediction 221 249 - -
Lele55g0488 632 Gene3D - 272 343 - -
Lele55g0488 632 SUPERFAMILY Homeodomain-like 274 344 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0488 Lele-ChrLele55 3091202 3099901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0488 1 356 Homeobox Transcription Factor Family AT1G23380 58.038 7.40e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele55g0488 Ubie_methyltran 1.7e-41 CL0063