Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0486 ATGGTAAAGCCAAAAAAGCTGAAAACTTTGTTTCCCTCTGAAATGTCTGGTGCTCCCCTTCTGCTGCTTCTTCTTTTTCGCTTCGCAATTCCTTCTCTTTCTGATCCAAGAGCTACAGAAGCAGCTCTGATGTGTACAAACAGAACAACACCATTTTCCGAACGCAATATCTTCACAGACAATTTCTTAGCTGCGTTAGACGCTTTGACCCCTTCAATTGCTTGGCAAAGATACGCCTCTGTTATTAACGGGACTGGAAATTCCTCTGTTTATGCTTTCGCACAGTGCATGGAAGATCTATCTGAATGGGATTGTAATGTCTGCTTCGCACAGATCAAAACTCAAGTTCCAAGCTGTTTACCATTTCAGAGAGGGATTCGTGGTGGAAGAGTGTTCTTTGATGGGTGTTATCTAAGGTATGATGATTACAACTTCTTCAATGAAAGTCTCAGTGATGAAGACAGAACTGTGTGTGGAAGCAAAGAGTTTGGTGGGAATCAGAGTGTTTATGAGGCTAATGCAATGGAGTTAGTGAGGAATTTGAGCGTTGAAGCACCTAAGAATGGTGGGTTCTTTGTGGGTTTTGTGAGAAAAAGTAATGTGACTGTTTATGGGTTGGCTCAGTGCTGGGAATTCGTCAATGGAAGTTCTTGTGCGAAATGTTTAGCAGAAGCTGTAAATAATATTAGTTCTTGTACTCCAAAAGAAGAAGCAAGAGTGTTGAATGCTGGATGTTATATGAGATATTCAGTCCAAAAGTTCTATGACAACACAACCAATCCCCTTACAAGAAATCAAGGGAATAGCAGCAGTTCAACTATAATGCTGGCTGCATCAAGTGCTGGATCAGCTCTTTTACTGGTTGTTGCAGTAATTGCTTTCTTTGCAAGGAAGAGGATGCTGAGGAAGAAGAGAGAAAGAAGACAGTTTGGAGCACTTTTGGACAGAGTTTACAAGTCCAAGCTAAATATGACATATGAAGTTCTTGAAAGAGCCGCAAATTACTTCAATGCCTCCAATAAGCTTGGACAAGGAGGTTCAGGTTCTGTTTATAAAGGAGTTTTGCCTGATGGGAATATTCTAGCCATAAAACGGCTTAGCTTTCACACAACACAATGGGCAGATCATTTCTTCAATGAGGTTAATCTGATAAGTGGCATTCATCATAAGAATCTTGTAAGGCTTCTCGGTTGCAGCATTACGGGACCCGAAAGCCTTCTTGTTTATGAATACGTGCCAAACCAAAGCGTCCACGATCACTTTTCTGTGAAGCAAAAATCTCAACCCTTGACTTGGGAATCACGGCGAAAAATCATATTGGGAACTGCAGAGGGATTAGCTTATCTTCATGAGGAATCGCCAGTGAGAATTATTCATAGAGATATAAAACTAAGCAACATTATGCTTGAAAATGACTTCACACCCAAGATAGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGATGGGACTCATATTAGCACTACTGTTGCTGGCACCCTTGGTTATATGGCTCCAGAGTATGTCATTCAAGGAAAATTAACGGAGAAAGCAGACATTTACAGTTTCGGAGTTGTTCTGATTGAAATCATATCAGGAAAAAGGAGTAGTTCTTTTGTTCTAAATGCATCCTCCATCCTACAAGTGGTTTGGAATCTTCATAGGTCAGGCAGCCTATGTAACGTGGTAGATCCGAGGCTTGAAGGGGATTATCCGGCGGAGGAAGCTTGCCGGCTGCTTCGGATAGGATTGCTTTGTGCACAAGCATCAGCAAATCTGCGACCATCAATGCCAGAAGTTGTGAGAATGATGAGCAGCAATGAGGAAATTGCAGAGCCAACACAACCACCTTTTCTGGTTCAAAGCAGTGTAGAATGCAGCAAATCTGAATATAATTTTCATACTTCAGAGGACAGCAGCATGACTGAAAGCCTTATTCCTCCTAGATGA 1950 0.4149 MVKPKKLKTLFPSEMSGAPLLLLLLFRFAIPSLSDPRATEAALMCTNRTTPFSERNIFTDNFLAALDALTPSIAWQRYASVINGTGNSSVYAFAQCMEDLSEWDCNVCFAQIKTQVPSCLPFQRGIRGGRVFFDGCYLRYDDYNFFNESLSDEDRTVCGSKEFGGNQSVYEANAMELVRNLSVEAPKNGGFFVGFVRKSNVTVYGLAQCWEFVNGSSCAKCLAEAVNNISSCTPKEEARVLNAGCYMRYSVQKFYDNTTNPLTRNQGNSSSSTIMLAASSAGSALLLVVAVIAFFARKRMLRKKRERRQFGALLDRVYKSKLNMTYEVLERAANYFNASNKLGQGGSGSVYKGVLPDGNILAIKRLSFHTTQWADHFFNEVNLISGIHHKNLVRLLGCSITGPESLLVYEYVPNQSVHDHFSVKQKSQPLTWESRRKIILGTAEGLAYLHEESPVRIIHRDIKLSNIMLENDFTPKIADFGLARLFPEDGTHISTTVAGTLGYMAPEYVIQGKLTEKADIYSFGVVLIEIISGKRSSSFVLNASSILQVVWNLHRSGSLCNVVDPRLEGDYPAEEACRLLRIGLLCAQASANLRPSMPEVVRMMSSNEEIAEPTQPPFLVQSSVECSKSEYNFHTSEDSSMTESLIPPR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0486 649 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Lele55g0486 649 Pfam Salt stress response/antifungal 162 251 IPR002902 -
Lele55g0486 649 Pfam Salt stress response/antifungal 45 143 IPR002902 -
Lele55g0486 649 ProSiteProfiles Protein kinase domain profile. 336 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0486 649 SMART serkin_6 336 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0486 649 Gene3D Transferase(Phosphotransferase) domain 1 412 616 - -
Lele55g0486 649 ProSiteProfiles Gnk2-homologous domain profile. 39 145 IPR002902 -
Lele55g0486 649 FunFam Cysteine-rich receptor-like protein kinase 3 154 254 - -
Lele55g0486 649 FunFam Cysteine-rich receptor-like protein kinase 2 412 612 - -
Lele55g0486 649 CDD STKc_IRAK 342 604 - -
Lele55g0486 649 ProSiteProfiles Gnk2-homologous domain profile. 151 254 IPR002902 -
Lele55g0486 649 Gene3D Phosphorylase Kinase; domain 1 296 411 - -
Lele55g0486 649 Pfam Protein kinase domain 337 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0486 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 91 639 - -
Lele55g0486 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Lele55g0486 649 FunFam Cysteine-rich receptor-like protein kinase 2 38 145 - -
Lele55g0486 649 Gene3D - 154 254 IPR038408 -
Lele55g0486 649 Gene3D - 39 145 IPR038408 -
Lele55g0486 649 FunFam Putative DUF26-domain receptor-like protein kinase family protein 296 411 - -
Lele55g0486 649 SUPERFAMILY Protein kinase-like (PK-like) 321 631 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0486 Lele-ChrLele55 3078542 3081647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0486 31 501 Receptor kinase-like Gene Family AT1G70530 60.805 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele55g0486 Pkinase 3.8e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0991 53 19399997 19403114 Lele55g0486 55 3078542 3081647 hybridization
Lele54g0970 54 16028231 16031380 Lele55g0486 55 3078542 3081647 hybridization