Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0479 ATGGCAGGGGCAGCCTCTGCTCTCTTCCTTCTTGACATTAAAGGCCGCGTTCTCATTTGGCGCGATTACCGTGGCGATGTCTCCGCCGTCGAGGCAGAGCGCTTCTTCACCAAGCTCATCGAGAAAGAGGGAGATCCGCAATCTCAAGATCCAGTTGTATATGATAATGGTGTGACCTACATGTTTATACAGCATAGCAATGTCTACCTCATGATAGCAGCCAGGCAAAACTGCAATGCTGCTAGCCTTCTTTTCTTCCTACATCGTATAGTTGATGTTTTTAAGCACTATTTTGAAGAATTGGAAGAGGAATCACTTAGGGATAACTTTGTTGTTGTGGTAAAACCTTGGGACCTTCTAATTTATCTTTACGAACTCCTTGATGAAATTATGGACTTTGGCTACCCTCAGTATACCGAGGCAAAGATTCTAAGTGAATTTATCAAGACTGATGCTTATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTAACTAATGCTGTGTCTTGGCGTAGTGAAGGCATAAATTACAAGAAAAATGAGGTTTTCTTGGATGTGGTGGAGAGTGTTAACATACTTGTCAATAGCAATGGGCAAATAATTAGGTCTGATGTTGTTGGAGCACTGAAGATGAGAACATATTTGAGTGGCATGCCTGAGTGTAAACTTGGCCTAAATGATAGAGTACTATTAGAGGCACAAGGAAGGGCGACCAAGGGAAAGGCCATTGACTTGGAAGACATTAAATTTCATCAGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGAACCATTTCCTTCATACCACCAGATGGATCATTTGATTTGATGACATATAGGCTCAGCACACAGGTTAAGCCTTTAATTTGGGTGGAAGCTCAAGTTGAAAGGCATTCAAAAAGCCGGATTGAGATTATGGTAAAAGCTAGGAGTCAATTTAAGGAACGTAGCACTGCCACAAACGTTGAGATTGAGTTGCCTGTACCTGCTGATGCAACCAACCCAAATGTTCGAACTTCAATGGGGTCTGCATCATATGCCCCTGAAAAGGATGCATTGATCTGGAAAATAAGATCCTTTCCCGGAGGCAAGGAGTACATGTTAAGGTCAGAGTTTCGTCTTCCCAGCATAACAGCTGAGGAAGCAACTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAGATACCATATTTTACTGTTTCTGGGATACAGGTAAGATACCTGAAGATAATTGAGAAAAGTGGGTATCAGGCCCTTCCATGGGTGAGATACATTACAATGGCTGGAGAGTACGAACTGAGGCTTATTTGA 1317 0.426 MAGAASALFLLDIKGRVLIWRDYRGDVSAVEAERFFTKLIEKEGDPQSQDPVVYDNGVTYMFIQHSNVYLMIAARQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVVKPWDLLIYLYELLDEIMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSKSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRSEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0479 438 CDD AP1_Mu_N 6 155 - -
Lele55g0479 438 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 169 436 IPR036168 -
Lele55g0479 438 PANTHER AP COMPLEX SUBUNIT MU 5 436 - -
Lele55g0479 438 Gene3D - 5 156 - -
Lele55g0479 438 PRINTS Clathrin coat assembly protein signature 355 366 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 PRINTS Clathrin coat assembly protein signature 103 130 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 PRINTS Clathrin coat assembly protein signature 171 199 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 PRINTS Clathrin coat assembly protein signature 315 330 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 PRINTS Clathrin coat assembly protein signature 246 273 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 SUPERFAMILY SNARE-like 6 151 IPR011012 -
Lele55g0479 438 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 169 189 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 FunFam AP-1 complex subunit mu-1 isoform 1 5 155 - -
Lele55g0479 438 Gene3D Mu homology domain, subdomain B 288 436 - -
Lele55g0479 438 CDD AP-1_Mu1_Cterm 166 436 - -
Lele55g0479 438 Gene3D Mu homology domain, subdomain B 176 432 - -
Lele55g0479 438 Pfam Adaptor complexes medium subunit family 169 436 IPR028565 -
Lele55g0479 438 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 266 280 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 PIRSF AP_complex_mu 4 438 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele55g0479 438 ProSiteProfiles Mu homology domain (MHD) profile. 180 436 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0479 Lele-ChrLele55 3028221 3032085 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0998 53 19460799 19464637 Lele55g0479 55 3028221 3032085 hybridization
Lele54g0977 54 16063069 16067152 Lele55g0479 55 3028221 3032085 hybridization