Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0472 ATGGCTCTGCTTCTAGGCAGTATTCAACCTCAGATACTAACTTCCCTTCGTCATGATCATAGAAAACCTTTTTCCTTCCTTCGATTTTGCCTGGAGGAAGCTGGTGGAACTTCTCCGAAAACGTTGAAATTCAAGATTCAGCTAAACCCGTTACTGTTCGGATATTTCCATAGCGTATTTCTTAACAGCGTCTATCTTCTCCGCGCAGAGTGCGGATGTTACAGTTTTCCGTCGGAATGTGCTTCTCTTGGTTCTGTTCTGTATAACTTCGGGAATATGCAGGCGGCCGAAATAAAGCACTTTCAAATAGCAGCATATGAGAAATTGAACAATCTTTTTCCGGCTGTTGTCACTAGTTTTTCATTTGAAACTTTCCATTTTGCATGTGGAATATGCTTCAGTGGGATACGAGGCGGCTGTTTTGGTATTGCAAACATGATACTGGTAAAGAGAATGAAAGAAACATTATACTCCTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGTAACAGTTGGTGATCTGACAAGTAGGCTTGGTGCTGATTGCCAACAAGTTTCACGTGTTATTGGAAATGATCTTAACTTGATACTGCGCAATGTTCTTCAGGGAACAGGTGCATTAACCTACTTGTTATTTTTGTCTTGGCCACTTGGTTTATTTACTACTCTCTATATTAGCATCGGTTTTGCTACTTTATGGAAGGTACCAGAAAAAGGCTGCAAAGTTGCACAAGAGACGTTTTCTCTTATTAGAACTGTCCGTGTTTATGGAACAGAAGAAGAAGAACTAGGAAGGTACAAATTGTGGCTGGGAAAGTTAGCTGATATAAGCTTGAGACAAAGTGCTGCGTATGGATTTTGGAATTTCAGCTTCAATAATCTTTATCATTCAACTCAGGTATCTGTAGTGCAGCAAATAAATATTGCTGGTCGACCTGGTGAGGTGGTTGCAATAGTAAGAAACTGCTCCAAATTTTTTCAAAATTTCCTCATCTGCACAATGACTAAGATTTTGATTGATGGCGCTGCTCTTAAAAGAGTTGGACATCACGTGGTGGAGAGAAAGAATTGGATTTGTTGGACAGAGGATGTTGAATGGACTGCAAAGCAAGCTTATGCCCATGACTTCATCTCAGCACTTCCTAATGGCTATGAAACACTTGTTAATTATGATTTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTATTCTCAGGGATCCAAAAATATTGGTCCTTGATGAAGCCACAAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGTGGGTCATCTTTTGTTGGAGTTATCCTTTAAATTCTATCTTGATTCCGCGTTTGAAGTTTATGACCTGCTTTGCAGGCTTTCTACCATACAAGCAGCAGACAGGATTGTGGTAATGGATAGTGGTAAAATTGTTGAGGTTGGGAGTCACAGTGAACTTCTCTTAAGAGATGGTTTGTACGCACGATTGACTAGTAAACAGGCTGATGCAGTGGCATGA 1521 0.4037 MALLLGSIQPQILTSLRHDHRKPFSFLRFCLEEAGGTSPKTLKFKIQLNPLLFGYFHSVFLNSVYLLRAECGCYSFPSECASLGSVLYNFGNMQAAEIKHFQIAAYEKLNNLFPAVVTSFSFETFHFACGICFSGIRGGCFGIANMILVKRMKETLYSSLLLQDISFFDNVTVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGTGALTYLLFLSWPLGLFTTLYISIGFATLWKVPEKGCKVAQETFSLIRTVRVYGTEEEELGRYKLWLGKLADISLRQSAAYGFWNFSFNNLYHSTQVSVVQQINIAGRPGEVVAIVRNCSKFFQNFLICTMTKILIDGAALKRVGHHVVERKNWICWTEDVEWTAKQAYAHDFISALPNGYETLVNYDLLSGGQKQRIAIARAILRDPKILVLDEATSALDAESEHNVKVGHLLLELSFKFYLDSAFEVYDLLCRLSTIQAADRIVVMDSGKIVEVGSHSELLLRDGLYARLTSKQADAVA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0472 506 Gene3D - 363 502 IPR027417 -
Lele55g0472 506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 127 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele55g0472 506 SUPERFAMILY ABC transporter transmembrane region 127 304 IPR036640 GO:0005524|GO:0016020
Lele55g0472 506 Gene3D ABC transporter type 1, transmembrane domain 112 331 IPR036640 GO:0005524|GO:0016020
Lele55g0472 506 Pfam ABC transporter 356 423 IPR003439 GO:0005524
Lele55g0472 506 PANTHER ABC TRANSPORTER B FAMILY 84 305 - -
Lele55g0472 506 ProSitePatterns ABC transporters family signature. 395 409 IPR017871 GO:0005524|GO:0016887
Lele55g0472 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 501 IPR027417 -
Lele55g0472 506 Pfam ABC transporter transmembrane region 126 226 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele55g0472 506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 252 500 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0472 Lele-ChrLele55 2980213 2985570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0472 365 504 Calmodulin-binding Proteins AT2G36910 45.139 7.51e-25 107