Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0448 ATGGCAAGGGAGAAAATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTGACATTCTCAAAGCGACGCAGAGGACTCTTCAAGAAAGCTGAGGAGCTCGCAGTTCTTTGCGATGCAGATGTTGCTCTTGTGATCTTCTCCTCTACCGGCAAGCTCTTTCAATACTCTAGTTCAAGCATGAAGGAATTACTAGAGAGGCGTCATTTGCACTCAAAAAACCTTTCGAAGCTGGACCACCCGTCTCTGGTGTTGCAGCTAGTTGAGGACAGCAACTACTTGAGTTTGGGCAAGGAGATTACCGAGAAAAGCAGTCAACTTAGGCGGATGAGAGGAGAGGATCTTCAAGGTTTGAATATTGAAGAATTACAGCAACTTGAGACGTCTCTCGAGGCTGGGTTGAGCCGTGTAATTGAGTCGAGGTCACAGATGATGATGGATGAGATCAGTGATCTCGAAAGAAAGGGAATGCAATTGATGGAAGAGAACGAGCGTTTAAGACGTCAAGTGACAGAAATGCCAAGTGAGGCATGCGGTGCTGAGGAAGGTCAGTCATCTGAGTCGGTCGGTAACGTTTGCAGCTTCAATGGGCATCCTCAAGACCATGATGTCGACTCAGACACGTCCCTCAGATTGGGGCTACCATATTCTGGGCGAAGGAAATTTCCAGGGTGTGTCAACAAACCGATATCATCTAGTAAAAGGAAGGACCCTCAAATTGCGTTTGAACTTATGCTATCCTAA 747 0.4712 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELAVLCDADVALVIFSSTGKLFQYSSSSMKELLERRHLHSKNLSKLDHPSLVLQLVEDSNYLSLGKEITEKSSQLRRMRGEDLQGLNIEELQQLETSLEAGLSRVIESRSQMMMDEISDLERKGMQLMEENERLRRQVTEMPSEACGAEEGQSSESVGNVCSFNGHPQDHDVDSDTSLRLGLPYSGRRKFPGCVNKPISSSKRKDPQIAFELMLS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0448 248 FunFam Transcription factor, MADS-box 13 83 - -
Lele55g0448 248 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lele55g0448 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele55g0448 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele55g0448 248 Coils Coil 150 170 - -
Lele55g0448 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele55g0448 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele55g0448 248 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele55g0448 248 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Lele55g0448 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele55g0448 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele55g0448 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele55g0448 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele55g0448 248 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lele55g0448 248 MobiDBLite consensus disorder prediction 179 213 - -
Lele55g0448 248 MobiDBLite consensus disorder prediction 182 196 - -
Lele55g0448 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0448 Lele-ChrLele55 2807371 2811099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0448 1 219 MADS-box Gene Family AT2G22540 63.900 1.03e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele55g0448 K-box 1.7e-17 No_clan