Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0429 ATGAAGTCGCTAGTCTTGGATTTGCAGCTTTTCTTTCTGCAATGTGGTTGTTCTGACAACAAGATCTTAGAAAGCAGTAGAAAGATCCTGTGCAGAAATCTAAACAGAACTCCAAAACGCAGTTCTGCAGTTAAGCTAAATACAGAATATCATGGGAAAGTGGAGATGGACAATGGCATGGTCCAAGTCACTCTGTTAAGACCCGAGGGGAATGTCGTGGGAATATCATATAGGGGAATCGACAATGTACTAGAATCTCGTATTTTGATGTGGATTGGAAGAAACCAGGATAAAATAATCATCATCATCATCATCAGAGAATCGACGGGGACAAAGTTTACAATTGTTGCTGCAGACAAAAATCAAGTGGAGATTTCGTTTATAACAACATGGACATCTTCCATGGAAGGCAAAAGTGTCCCCATCAACGTAGACCAAAGGTATATATTGCGACGAGGTAGTTCTGGATTTTACTCTTACATTATATTCGAGCATCCAGAAGGATTTCCAGCAGTGGAGGTTGAGCAAATCATGACCGTTTACAAGCTTCAGGAAGACAGGTTTCAAAATGCTAACTCTGCTTATGTTGGTTTAGCTTTGCCTGGTGTTGCAGGATCATGGCAAAGAGAAAGCAAGGGTGTTGGATCAAATTGGGTTTTCTGGTTTAGACAATATGGATTGTGGGCACGTTATGCTGAATTGTATCCAAAAAATGATCTAATTTACACTGTTGGTGCTCACTCTCATCATAAGGAATGTTTTTCTTGGGTTAATGTATATCTGATGGAGACGATAGATTTCTTCTTTCAGTTTCGTGTAAGGATGAGTTTGCCATTGTTCTTCTTCTTCTTCTTGCTTGCTGGTTGTTCTGAGATCACCAAATCCAGTGCCTCACGTAAGATTGAAGACTCCCATCAACCTGCTGTCACTCTGCAACAAAGTGATGACAAGGTGGTGATGTATAATGGGATCGTCAGCGTTACGGTGTCAAGGCCAGACGGCAATTTGTTGGGATTATCATATAATGGGATTGATAATCTTCTAGAACCTCGTACTCGTCTTTATGATAGAGGGTATTGGGACTTCTCTTGGAACCCACAAGGTTACCCCAGTAAATATCACAGATTCAAAGGGACAACGTTTTCTGTTATAATGGATACCGAAGATCAGGCTGAAGTTTCTTTCTTATACCCATGGAATTCTTCCTCGCCCGCAGGAACCATCCCAATGAATGTAGATATAAGGTATATTTTGCGTAGAGGCAGCTCAGGATTATATTCATACGCCATATTGGAGCATTCAGACAATTTTCCTGCAATTCGGGTGGATGTCTTTAGGCTCGCTTACAAGCTCAACCAATACCTGTTCCACTACATGGCTATAACAGACGAAAGGCAGAGAGAAATGCCGACTGCTGATGATAGATCAAAGGGCCAGACCCTTGATTATCCTGAAGCTGTCCTCTTAACCCATCCTAGCAACCCTCAATTCTTAGGAGAGGTGGATGATAAATACATGTACTCGGTTGAGAACAAAGACAACCAAGTTAGCGGATGGGTCTCTTTTAACACTACCAATTCTTCTTCAGTTGGCTTCTGGATGATTACACCCTCCAACGAGTTCCGTAATGGTGGACCTACCAAGCAAAGTCTCACCTGTCATGTTGGCCCTGTCATCCTCAACTCTTTCTTGAGCCCGCACTATGCTGGGAAGGACATATCAATGACATTCAATGAAGGAGAAACCTATAAGAAGGTATTCGGACCCACTTTTCTGTACCTCAACAGTGTTCCAAACCCCCATGATTCTCAAACTCTCTGGCAGGATGCTAAAAACCAGTTGCAAAAGGAAGTTGAAAACTGGCCCTATGATTTCCCTCAATCAAAAGATTTCATTCCATCCAATCAGCGTGGAAAAGTGTCAGGACAATTAATATTCAAATGGTACGCGACAGGAGCTAACGTTAATAATGCTTACGTTGGTCTAGCCCTCCCAGGCGATGAAGGATCATGGCAAGCAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCTGATAACAGCGGCTTCTTCACTATACAAAATGTTCTGCCTGGGGACTACAACTTGTATGCTTGGGTCCCTGGCATTCTTGGTGATTACAAATATGAGTTAGTCATTACCATCAAACCAGGAGATGCCATCCAATTAGGTCAACTAAATTATTGGCCTCTAAGAAATGGTCCTACGGTTTGGGAAATTGGGATTCCTGATCGATCAGCGCAAGAGTTTTATGTGCCAGACCCATATCCTAACCTCGTTAACAACTTATACTTAGGAAAGACCAAAGACAAGTTTAGACAATACGGTTTGTGGAAACGTTATGCTGAATTATATCCCACTAATGACCTCGTTTACCATGTCGGTGTTAGTGATTATTCCAAAGACTGGTTCTACGCTCAAGTCCCCAGGGACCTAGGAAATGGCACATACATTGCAACAACATGGGAGATAAGATTTGAACTGCCATTTGTCATTACAGGAAGTTACACCCTACGTATTGCCTTAGCATCAGCCACTAATGCTCACTTATTTGTTTGGGTGAATAAAGGCGTGGATCGTCACCTGCGGTTCAACACAGGAATAAGAGGGGAGGACAATGCGGTAGCAAGGCATGGCATACATGGTTTGTATTGGAAGTACAGCTTCCAAGTACCAAGCTATCTACTTGTGAAAGGAACCAACTCCATTCACCTCTCACAACCCAAAGCTAAATCTCCTTTTGAAGGCATTATGTATGATTATATCCGTTTTGAAAGCCCCTCGCTTTCCGGCTCTGGCCATAATAATTAA 2829 0.4235 MKSLVLDLQLFFLQCGCSDNKILESSRKILCRNLNRTPKRSSAVKLNTEYHGKVEMDNGMVQVTLLRPEGNVVGISYRGIDNVLESRILMWIGRNQDKIIIIIIIRESTGTKFTIVAADKNQVEISFITTWTSSMEGKSVPINVDQRYILRRGSSGFYSYIIFEHPEGFPAVEVEQIMTVYKLQEDRFQNANSAYVGLALPGVAGSWQRESKGVGSNWVFWFRQYGLWARYAELYPKNDLIYTVGAHSHHKECFSWVNVYLMETIDFFFQFRVRMSLPLFFFFFLLAGCSEITKSSASRKIEDSHQPAVTLQQSDDKVVMYNGIVSVTVSRPDGNLLGLSYNGIDNLLEPRTRLYDRGYWDFSWNPQGYPSKYHRFKGTTFSVIMDTEDQAEVSFLYPWNSSSPAGTIPMNVDIRYILRRGSSGLYSYAILEHSDNFPAIRVDVFRLAYKLNQYLFHYMAITDERQREMPTADDRSKGQTLDYPEAVLLTHPSNPQFLGEVDDKYMYSVENKDNQVSGWVSFNTTNSSSVGFWMITPSNEFRNGGPTKQSLTCHVGPVILNSFLSPHYAGKDISMTFNEGETYKKVFGPTFLYLNSVPNPHDSQTLWQDAKNQLQKEVENWPYDFPQSKDFIPSNQRGKVSGQLIFKWYATGANVNNAYVGLALPGDEGSWQAESKGYQFWTQADNSGFFTIQNVLPGDYNLYAWVPGILGDYKYELVITIKPGDAIQLGQLNYWPLRNGPTVWEIGIPDRSAQEFYVPDPYPNLVNNLYLGKTKDKFRQYGLWKRYAELYPTNDLVYHVGVSDYSKDWFYAQVPRDLGNGTYIATTWEIRFELPFVITGSYTLRIALASATNAHLFVWVNKGVDRHLRFNTGIRGEDNAVARHGIHGLYWKYSFQVPSYLLVKGTNSIHLSQPKAKSPFEGIMYDYIRFESPSLSGSGHNN 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0429 942 CDD RGL4_M 636 732 IPR029413 -
Lele55g0429 942 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 312 934 - -
Lele55g0429 942 SUPERFAMILY Galactose-binding domain-like 739 931 IPR008979 -
Lele55g0429 942 Gene3D - 308 610 IPR014718 GO:0030246
Lele55g0429 942 Gene3D - 632 728 - -
Lele55g0429 942 CDD RGL4_C 744 931 - -
Lele55g0429 942 SUPERFAMILY Starch-binding domain-like 632 730 IPR013784 GO:0030246
Lele55g0429 942 Gene3D - 740 931 - -
Lele55g0429 942 CDD RGL4_N 314 603 - -
Lele55g0429 942 Pfam Polysaccharide lyase family 4, domain II 657 728 IPR029413 -
Lele55g0429 942 Pfam Rhamnogalacturonate lyase family 298 501 IPR010325 -
Lele55g0429 942 Pfam Rhamnogalacturonate lyase family 40 189 IPR010325 -
Lele55g0429 942 Pfam Polysaccharide lyase family 4, domain III 742 929 IPR029411 -
Lele55g0429 942 SUPERFAMILY Galactose mutarotase-like 310 602 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0429 Lele-ChrLele55 2668907 2680141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0429 309 934 Polysaccharide Lyase AT1G09890 53.555 0.0 667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1050 53 19800569 19810180 Lele55g0429 55 2668907 2680141 hybridization
Lele54g1030 54 16432534 16440213 Lele55g0429 55 2668907 2680141 hybridization