Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0428 ATGAAGCTGGGCAGCTTTTGTTTTGCAGAGAGGTGGTTTCGTTTGGGGAAGAAGATGAACAAGTTGGGTGAGATAAGGAAACGGGTTATCTTGTTGTGGTGGTTAGGAATGAGTTTGCAGTTATGCTTCTTGTTGCAGCTGGGTGCTTAAAATACAAAAAGTCGAAGAGAGTTGAGGGGAATAAACACTTCAAAACCCAGACCTTCTATTTCTGCAGTGAAGCTGAATACAGAAGATCATGGCCAAGTGGTGATTGAGAATGGCATTGTTCAAGTCACTCTGTCCAGCCCCGAGGGGTATATTCTTAGCATATCATATGACGGAATCGACAATGTCCTACAGTCTCGTAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTCTGGAATAAGCCTGGGAACAGCAGTACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTATATCAGTGGACGACAACCAAGTGGAGATTTCATTTGTAAGAACATGGACACCTTCCCTGGAAGGCGAAAATGTCCCCATGAACATAGACCAAAGGTACATATTGCGAAGAGGCGATTCAGGGTTTTACTCGTACACAATATTTGAACGCCCAGAAGGATTTCCAGCGGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTGGAGGGAGAAAGGTTCGTGTATATGGCTATATCAGACAATAGGCAAAGGTACATGCCAAGCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCTGTTCTATTAACCAATCCATCTAATGAAGACTTTAGAGGAGAGGTGGATGACAAATATCAGTACTCTTGTGAGAATGTAGACAACAGAGTGCATGGTTGGATTAGCGCTGATGCTGAAGCACCCGTGGGCTTTTGGGTAATTACCCCCACTAACGAGTTTCGCAATGCTGGTCCCATCAAGCAAGACCTAACCTCTCACGTGGGCCCATTTGCCCTCTCCATGTTTGTGAGCACACACTATGCCGGGAAGGAGGTAACTATGGAATTTCAAGAAGGCGAGAGTTATAAGAAGGTTTTCGGCCCTATTTTTGTGTATCTTAACTCTGTTTCAAGCTCTGAGAATTCACTCACACTCTGGACAGATGCTGAACAACAGATGTCAAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCTCAATCACAAGCTTACAATCCACCCACTCAACGTGGAAGCGTTGTTGGAAGATTACTGGTTCAAGATTGGTACATCAGAGGAGGCAGATTTCTATATGCTGACTCTGCATATGTTGGTCTTGCTCTTCCTGGTGCTGCAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACCCAAGCAAACAAGAAGGGCTATTTTGTCATAAACAACGTTGTTCCTGGAGATTACAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAAATACAATGCTACAATCACCATCACACCAGGATGTGTAATCAAATTGGATTCACTTGTATATAATCCGCCAAGAAGTGGATCCACTGTTTGGGAAATTGGAGTCCCAGATCGGTCCGCTGCAGAATTCTATATCCCAGACCCTTACCCTACACTCATGAACAAATTATACAATGAACAACCCAAAGACAAGTTTAGACAATATGGATTATGGGAACATTATGCTGATTTATATCCAAACAATGATCTTGTCTACACTGTTGGTGTCAGTTCATATGATCAAGATTGGTTTTATGCTCATGTTACAAGGAGCACTGGAAATAAGACATACCAGGCAACGACATGGCAGATTAGATTTAATCTTCAAAATGATCCATTCAAAGGAAATTACACCCTGCAACTAGCCTTAGCAGCAGCCTCTAACTCTGAACTAAAGATTTGGATGAATGGGCAAGGTAACGTTCCTGCTTTGTTTGAAACTGGGAAAATTGGAGGAGACAGTGCCATACCCAGGCATGGAATCCATGGACTGTACTGGTTGTTCAGCATTGAAGTTCCAAGCGATGTTTTAGTGAAAGGGAATAATACAATCTATTTACAACAGTCATTGGCCATAAGTCCTTTTCAAGGAGTTATGTATGACTATATTCGTTTAGAAAGACCACCAACTCTAAGGACTTGA 2121 0.4257 MKLGSFCFAERWFRLGKKMNKLGEIRKRVILLWWLGMSLQLCFLLQLGAXNTKSRRELRGINTSKPRPSISAVKLNTEDHGQVVIENGIVQVTLSSPEGYILSISYDGIDNVLQSRNEEQDRGYFDVVWNKPGNSSTFQRIHGTEFSVISVDDNQVEISFVRTWTPSLEGENVPMNIDQRYILRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLEGERFVYMAISDNRQRYMPSMKDRETGQPLAYPEAVLLTNPSNEDFRGEVDDKYQYSCENVDNRVHGWISADAEAPVGFWVITPTNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEVTMEFQEGESYKKVFGPIFVYLNSVSSSENSLTLWTDAEQQMSKEVKSWPYDFPQSQAYNPPTQRGSVVGRLLVQDWYIRGGRFLYADSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGDYNLFAWVPGFIGDYKYNATITITPGCVIKLDSLVYNPPRSGSTVWEIGVPDRSAAEFYIPDPYPTLMNKLYNEQPKDKFRQYGLWEHYADLYPNNDLVYTVGVSSYDQDWFYAHVTRSTGNKTYQATTWQIRFNLQNDPFKGNYTLQLALAAASNSELKIWMNGQGNVPALFETGKIGGDSAIPRHGIHGLYWLFSIEVPSDVLVKGNNTIYLQQSLAISPFQGVMYDYIRLERPPTLRT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0428 706 SUPERFAMILY Galactose-binding domain-like 506 699 IPR008979 -
Lele55g0428 706 Pfam Rhamnogalacturonate lyase family 72 266 IPR010325 -
Lele55g0428 706 Pfam Polysaccharide lyase family 4, domain III 509 698 IPR029411 -
Lele55g0428 706 FunFam Rhamnogalacturonate lyase B 396 496 - -
Lele55g0428 706 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 74 702 - -
Lele55g0428 706 CDD RGL4_C 511 699 - -
Lele55g0428 706 Gene3D - 396 497 - -
Lele55g0428 706 Gene3D - 75 377 IPR014718 GO:0030246
Lele55g0428 706 Pfam Polysaccharide lyase family 4, domain II 423 495 IPR029413 -
Lele55g0428 706 CDD RGL4_N 76 362 - -
Lele55g0428 706 SUPERFAMILY Galactose mutarotase-like 77 363 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele55g0428 706 SUPERFAMILY Starch-binding domain-like 396 497 IPR013784 GO:0030246
Lele55g0428 706 Gene3D - 506 699 - -
Lele55g0428 706 CDD RGL4_M 399 499 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0428 Lele-ChrLele55 2660893 2665593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0428 70 701 Polysaccharide Lyase AT1G09890 56.447 0.0 735
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1052 53 19823618 19828507 Lele55g0428 55 2660893 2665593 hybridization
Lele54g1032 54 16447672 16452109 Lele55g0428 55 2660893 2665593 hybridization