Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0421 ATGGGAAGAGGGAAGATTGCGATTCAAAGGATTGAAGATACTGCAAGCAGGCAAGTGACTTTCTCGAAAAGGAGAAAGGGATTGATGAAGAAAGCGAGAGAGCTATCGATTCTTTGTGATGTAGAAGTTGGATTCGTCATATTCTCCAGCACCGGAAGGCTTCATGAATATGCCAACACCAGCATAAAATCAGTGGTTGAGATATATAACAGCTGCAAGGAGGAACATGAACGACTGATGAATCCAGAATCAGACCTCAAGTTCTGGCAAAGGGAGGAAGAAATATTAAGGCAGCAAGTTCATAATCTACAAGAAAACCATAGGAAATTAATGGGAGAACAGCTTTATGGTTTGAGTGTTAAAAACCTACAAGATATAGAGAATCAACTGGAGCTAAGTCTGCGAGGTGTCCGCATGAAAAAGGAACAAATTCTAACAGAAGAAATCCACGAGCCGAGAAGAAAGGTAAACGCTATCCATCAGCAAAATGTAGAACTCTATAAGAAGGTAAACCTCATTCAACAAGAAAACGTGCAACTATGCAATGAGGTTTATGGAACAACAGATGCGGCTGTAGCAAGTAGAAATGCATTCATTTCATATGCAGATCAAGATCCACTAGCAATGACCCAACTTCATTTATCGCAGCCTGAACTTGTGGCTCACGAGACATCAGGCAGTGCTACAAGATGA 693 0.4113 MGRGKIAIQRIEDTASRQVTFSKRRKGLMKKARELSILCDVEVGFVIFSSTGRLHEYANTSIKSVVEIYNSCKEEHERLMNPESDLKFWQREEEILRQQVHNLQENHRKLMGEQLYGLSVKNLQDIENQLELSLRGVRMKKEQILTEEIHEPRRKVNAIHQQNVELYKKVNLIQQENVQLCNEVYGTTDAAVASRNAFISYADQDPLAMTQLHLSQPELVAHETSGSATR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0421 230 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lele55g0421 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele55g0421 230 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele55g0421 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Lele55g0421 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele55g0421 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele55g0421 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele55g0421 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele55g0421 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele55g0421 230 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele55g0421 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele55g0421 230 Coils Coil 86 113 - -
Lele55g0421 230 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0421 Lele-ChrLele55 2628027 2631887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0421 1 228 MADS-box Gene Family AT2G22630 55.263 7.32e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele55g0421 K-box 2.1e-23 No_clan