Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0405 ATGAATCTTTGGACCGACGATAACTCCTCCGTCATGGACGCTTTCCTAGGCTCCGATCTATCTTCTCTCTGGCCTCCTCAGCAATCATCTGCTTCTACGACTACTACCACTGGAACTGACCCCACCAAAGCTTTATCTCAAAACCAGCTCTCGGTTTGCATCTTCAATCAGGAGACTCTCCAGCAACGTCTCCACGCGCTGATTGAAAAAGCCAGCGAGAGCTGGACCTACGCTATTTTCTGGCAATCTTCTTGTGATTACTCGGGAGCCTCCGTGTTGGCCTGGGGTGATGGCTACTACAAAGGCGAGGAGGTTAAAGGAAAGGGGAAGGCCAAAATGACGGCGTCTTCCGCGGCGGAGCAGGAGCACCGGAAGAAGATTCTTCGCGAGCTTAATTCGCTAATCTCCGGGTCGTCCTCCCCCCCAGATGACCCCGTAGACGAAGAAGTAACAGATACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGTGGATTGCCGGGGCAGGCTTTCCTTAATTCGAGCCCTGTTTGGGTCGCCGGTTCCGAGCGGTTGGCAGCATCTACATGCGAGAGGGCGAGGCAGGGTCAGGTGTTCGGGCTTCAGACTCTGGTTTGCATACCATCGGCGAGTGGGGTGGTCGAGCTAGGCTCCACGGAGCTGATATTTAAGAACTCTGATCTGATGAATATGGTTAGGGATTTGTTCAATTTCAATAGCGCCGAAGCGAGTTCGTTGTGGCTGTCAAATGCTTCAACTGCGGCAGATCAGGGCGAGAACGACCCTTCTTCGCTCTGGCTCAACGATCCTTCTGCAATTGAAATTAGGGATTCGGTGACTACTGTTGCGCCCAATTCAGTGCCCAGCTCTACCAACAGCCATGCCAATAATCCGAAGCCGATGCAGTTAGATACAAGAGGTTCCACGACTTTAGCTGAGACCCCAAGTTCCATTCATATCCCAAACGCTCACCATAGCCACCAACAACAACGGCAACAGCAGCGTCATTCGCTGAACCAGGGTTTCTTTTCACGGGAATTGAACTTTTCGGACTATGGATTGGACGGAAACGGCGTGAAAAACGGAAATTCGCATTCCCTGAAGCCGGAATACGGTGAGATTTTGAATTTCGGGGAGAGCAAGAAAAAAGCTTGTAATGGAAATGGGAATTTCCTTTCAGGTCAATCTAAGTTCAATGATGAGGACAAGAAGAGGAGGTCGCCTACGTCTAGGGGCAGCAATGACGAAGGCATGCTTTCTTTCACTTCAGGTGGGGTTTTGCCCGCTTCAAATATGAAGACCAGCGGAGGCGGCGATTCCGATCATTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGACAGTAAAGTGGCCGAACCAGAGAAAAAACCTCGGAAGAGAGGGCGAAAGCCCGCGAATGGAAGAGAGGAGCCTCTGAATCATGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTTAATCAACGGTTCTATGCGCTTCGTGCAGTGGTTCCAAACGTTTCAAAGATGGATAAAGCATCCCTTCTGGGCGATGCCATATCTTACATATCTGAGCTCAAGTCGAAGCTTCAGACAATGGAGTCAGACAAGAACGAATTGCAGGAGCAATTGGATTCTGTGAAGAAGGAACTGGAGCTAGCCCACAAAGGTTCAGCGCCACCTCCACCGGAGAAAGAACCAAAGCCGTCCAATCGTCAAGCTAGCAAGATCACTGATTTGGATATCGACGTGAAGATTATAGGCTGGGATGCGATGATTCGGATCCAATGCAGCAGGAAGAACCATCCAGCAGCGAGGTTGATGGCAGCATTGAAGGAGCTTGACCTGGATGTGAACCACGCGAGCGTGTCGGTGATGAATGATTTGATGATCCAACAAGCAACGGTGAGGATGGGGAGTCAATTCTACACACAGGAGCAACTCCGTTTAGCACTTTCGTCAAAAGTCGGCGATGTCCGATAG 1995 0.5043 MNLWTDDNSSVMDAFLGSDLSSLWPPQQSSASTTTTTGTDPTKALSQNQLSVCIFNQETLQQRLHALIEKASESWTYAIFWQSSCDYSGASVLAWGDGYYKGEEVKGKGKAKMTASSAAEQEHRKKILRELNSLISGSSSPPDDPVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVAGSERLAASTCERARQGQVFGLQTLVCIPSASGVVELGSTELIFKNSDLMNMVRDLFNFNSAEASSLWLSNASTAADQGENDPSSLWLNDPSAIEIRDSVTTVAPNSVPSSTNSHANNPKPMQLDTRGSTTLAETPSSIHIPNAHHSHQQQRQQQRHSLNQGFFSRELNFSDYGLDGNGVKNGNSHSLKPEYGEILNFGESKKKACNGNGNFLSGQSKFNDEDKKRRSPTSRGSNDEGMLSFTSGGVLPASNMKTSGGGDSDHSDLEASVIKEVDSKVAEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYISELKSKLQTMESDKNELQEQLDSVKKELELAHKGSAPPPPEKEPKPSNRQASKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVNHASVSVMNDLMIQQATVRMGSQFYTQEQLRLALSSKVGDVR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0405 664 FunFam Transcription factor bHLH13 474 548 - -
Lele55g0405 664 MobiDBLite consensus disorder prediction 402 416 - -
Lele55g0405 664 PANTHER MYC 48 659 IPR045084 GO:0003700|GO:0006355
Lele55g0405 664 MobiDBLite consensus disorder prediction 449 491 - -
Lele55g0405 664 MobiDBLite consensus disorder prediction 391 491 - -
Lele55g0405 664 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 484 551 IPR036638 GO:0046983
Lele55g0405 664 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
Lele55g0405 664 CDD bHLH_AtAIB_like 478 554 - -
Lele55g0405 664 Coils Coil 527 561 - -
Lele55g0405 664 MobiDBLite consensus disorder prediction 559 579 - -
Lele55g0405 664 MobiDBLite consensus disorder prediction 287 342 - -
Lele55g0405 664 Pfam Helix-loop-helix DNA-binding domain 485 530 IPR011598 GO:0046983
Lele55g0405 664 MobiDBLite consensus disorder prediction 417 443 - -
Lele55g0405 664 SMART finulus 487 536 IPR011598 GO:0046983
Lele55g0405 664 Gene3D - 473 561 IPR036638 GO:0046983
Lele55g0405 664 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 481 530 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0405 Lele-ChrLele55 2523822 2525816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0405 1 661 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.423 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele55g0405 bHLH-MYC_N 1.3e-53 CL0161