Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0402 ATGGCGTCCGAAAGCTTCACCGACAAGAACGTTGTCTTCAGAAAACTGAAGGCGAAGTCCGATAATAAGATGTGTTTCGATTGTAATGCAAAGAATCCAACTTGGGCGTCCGTCACTTATGGGATTTTTCTCTGCATCGATTGCTCGGCTGTTCATCGCAGTCTTGGTGTCCACGTAAGTTTTGTGAGATCTACGAATTTGGATTCATGGACCCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAATAATCGTGCACAGGCTTTCTTTAAGCAACATGGTTGGACAGACGGTGGTAAAATAGAGGCCAAGTATACATCTAGAGCTGCAGATTTGTATAGACAGATTCTTTCAAAGGAAGTTGCTAAAAGTATTGCTGATGAGGCTGATTTGCCAACATCACCTCTTGGTTCTCAGTCTGCACAAGTTTCTAATGGACCTCCTGAGGTTAAAACCAAAGAAGAACCAAAAGAGAACACCGTAGGGAAGCAAGAAATGCCTGAAAGCTCTGCGTCACCAAGAGCTTCACATACAATTGTTTCTTCTGCTGTAAAGAAGCCTATTGGTACAAAAAAGCCTGGGAAGAGTGGGGGCCTTGGTGCCCGGAAGCTTACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCGGAAGAACCACCTGCTCCAGTGTCTTCCTCAACAAATAGCAGTTTGCTTGCTGGGCCACCCCTGACATCTAGGTTTGAGTATGCTGATGATGTCCAGTCTTCTGAGTCAAACTCCGGAGGGTCACATCTAATTAGTCATGTGGCTCCACCAAAGTCATCAAGCTTCTTTGCAGATTTTGGAATGGATAGGGGTTTTCCAAAGAAATATGGATCAAATTCCTCAAAAGTGCAAGTTGAAGAATCTGATGAAGCGAGGAGGAAGTTCTCAAATGCTAAATCTATTTCTTCAGCCCAATATTTTGGTGGTCAGAACAGAGCCGAAGATGTGGATGCTCAAGTTACTTTGTCTAAGTTTTCAGGTTCAACTTCCATCTCCAGTGCTGATCTTTTTGGCCATTCGGACGACAAATCCGACATTGAACTCACTGCTAATGACCTCTTAAATCGACTATCCTTCCAGGCTCAGCAGGATATATCTAACATTAAAAATATTGCTGGAGAGACTGGAAAGAAGCTCAGCTCCCTGGCCTCCAATTTGTTAACGGACCTTCAGGACAGAATTCTTTAA 1218 0.4368 MASESFTDKNVVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLKMMSFGGNNRAQAFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSIADEADLPTSPLGSQSAQVSNGPPEVKTKEEPKENTVGKQEMPESSASPRASHTIVSSAVKKPIGTKKPGKSGGLGARKLTKKPSESLYEQKPEEPPAPVSSSTNSSLLAGPPLTSRFEYADDVQSSESNSGGSHLISHVAPPKSSSFFADFGMDRGFPKKYGSNSSKVQVEESDEARRKFSNAKSISSAQYFGGQNRAEDVDAQVTLSKFSGSTSISSADLFGHSDDKSDIELTANDLLNRLSFQAQQDISNIKNIAGETGKKLSSLASNLLTDLQDRIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0402 405 MobiDBLite consensus disorder prediction 133 147 - -
Lele55g0402 405 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Lele55g0402 405 MobiDBLite consensus disorder prediction 244 260 - -
Lele55g0402 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 4 405 - -
Lele55g0402 405 MobiDBLite consensus disorder prediction 163 179 - -
Lele55g0402 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Lele55g0402 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Lele55g0402 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Lele55g0402 405 SUPERFAMILY ArfGap/RecO-like zinc finger 12 124 IPR037278 -
Lele55g0402 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Lele55g0402 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Lele55g0402 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Lele55g0402 405 MobiDBLite consensus disorder prediction 221 236 - -
Lele55g0402 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Lele55g0402 405 Pfam Putative GTPase activating protein for Arf 12 100 IPR001164 GO:0005096
Lele55g0402 405 MobiDBLite consensus disorder prediction 130 262 - -
Lele55g0402 405 MobiDBLite consensus disorder prediction 285 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0402 Lele-ChrLele55 2493327 2495753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0402 13 91 C2H2 Transcription Factor Family AT4G21160 45.000 3.80e-20 89.0