Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0396 ATGGCTTCCCTTGGGAACCCCAGAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGCTTCTGTAGTCTCTACTGTCCACAATGGTGTTACATAGTGTATCCTCCTCCTCCTCCCTTTGAATTACCTGAACAAAATTCAAGCCCTATTTTTTCACCTCTGGTTATTGCAGTCATTGGAGTTTTGGCCAGTGCTCTTCTTCTTGTAATCTACTATACCATAATCTCCAGGTACTGTGGCAACCCAGAATCTTCAGATACACAGAATCATCACGACCCTTCAAATGATGAATTGGAACTCTTTCATGATCCTTCACTTCACGAGCCATGGCACCCATCACTCAGTGGTTTAGACGAGGCTCTGATAAAGTCCATCACGGTTTGTAAGTACAAGAAAGAAGATGGTTTGGTGACGGTAACAGATTGCTCTGTTTGTCTCAGTGAGTTCCAAGACGATGAAAGTATCAGGCTTTTGCCTAAGTGTAGCCATGCTTTTCACATACCTTGTATTGACATGTGGCTCAAATCACACTCCTCTTGTCCTCTCTGTCGTGCTAGTATTTTCACCTTCAACGCTTCAGCTCTTCTGATGGTGTCTGATAATTCCACGATAGAGAATTCAAATTTCCAGGAGAATCAGCTGGGGAATGAGAACAATGAAGTGGTGGGTTTAGCAGTGGAAGAAGAAAGTGAAGAAACCATACAACGTGTTACAACTCCCAAACCTAGTACATTGCGTGCTATGAGCGATTTGGGGAATTTGCAGGGAAGGCATCATAGTGTGATTGAGATTAAAGATGAAGGGTACGTTGAGCCCTTTAGAAGGTCAATTTCTATGGACCATTCATTCCAAAGCGGGAACAGAGTAGAAGAAGAAGAAGAAGAAGGCTCTGTAAATGAAGAAGGTCCATCAAAGAGATGGGGAGGAGAAAGCAGCAAATCTAACAACAGAAGAAGGGTATTGCAGTGTGTGTTGAGTCCGATTGTGATGAATAGATCGTTTTCAAGTGGAAGATTCTCTATCAGCAGAGGAAAACAAGGGATAATCCCTATCTGA 1062 0.4284 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFELPEQNSSPIFSPLVIAVIGVLASALLLVIYYTIISRYCGNPESSDTQNHHDPSNDELELFHDPSLHEPWHPSLSGLDEALIKSITVCKYKKEDGLVTVTDCSVCLSEFQDDESIRLLPKCSHAFHIPCIDMWLKSHSSCPLCRASIFTFNASALLMVSDNSTIENSNFQENQLGNENNEVVGLAVEEESEETIQRVTTPKPSTLRAMSDLGNLQGRHHSVIEIKDEGYVEPFRRSISMDHSFQSGNRVEEEEEEGSVNEEGPSKRWGGESSKSNNRRRVLQCVLSPIVMNRSFSSGRFSISRGKQGIIPI 353
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0396 353 PANTHER RING-H2 FINGER PROTEIN ATL16 41 308 IPR044600 GO:0016567|GO:0016740
Lele55g0396 353 CDD RING-H2_EL5_like 143 186 - -
Lele55g0396 353 SMART ring_2 144 185 IPR001841 -
Lele55g0396 353 FunFam RING-H2 finger protein ATL54 119 192 - -
Lele55g0396 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Lele55g0396 353 MobiDBLite consensus disorder prediction 282 315 - -
Lele55g0396 353 Pfam Ring finger domain 143 186 IPR001841 -
Lele55g0396 353 SUPERFAMILY RING/U-box 127 191 - -
Lele55g0396 353 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele55g0396 Lele-ChrLele55 2453752 2454813 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0396 1 252 C3H Transcription Factor Family AT3G03550 43.841 5.14e-70 221