Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0390 ATGGATAGGCCACCGTGTTGTTGTGACGAGAGTGGTGCTGTGAGGAGAGGACCATGGACACCTGAAGAAGATGACAAGCTTTCTGATTATATCACCAAACATGGCAGGGGAAATTGGAGAACACTTCCAAACCATGCGGGTCTCAACAGATGCGGCAAAAGCTGCAGGCTACGATGGACCAACTATCTTAGGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGCGATTGATCATCAACCTTCATTCTGTTCTTGGCAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGGACTGACAATGAGATTAAGAATTTCTGGAACACCAATTTAAGGAAGAAGCTTCTACAGATGGGTATTGACCCAGAAACTCACAAGCCAAGAACTGACTTGAAGCATCTTTTGAATATCTAG 423 0.4515 MDRPPCCCDESGAVRRGPWTPEEDDKLSDYITKHGRGNWRTLPNHAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTNLRKKLLQMGIDPETHKPRTDLKHLLNI 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0390 140 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lele55g0390 140 Gene3D - 70 137 - -
Lele55g0390 140 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lele55g0390 140 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lele55g0390 140 SMART sant 15 65 IPR001005 -
Lele55g0390 140 SMART sant 68 116 IPR001005 -
Lele55g0390 140 CDD SANT 18 63 IPR001005 -
Lele55g0390 140 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 133 - -
Lele55g0390 140 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lele55g0390 140 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lele55g0390 140 CDD SANT 71 114 IPR001005 -
Lele55g0390 140 FunFam MYB-related transcription factor 15 68 - -
Lele55g0390 140 FunFam Transcription factor MYB39 71 132 - -
Lele55g0390 140 Gene3D - 16 68 - -
Lele55g0390 140 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lele55g0390 140 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0390 Lele-ChrLele55 2427983 2428509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0390 1 138 MYB Transcription Factor Family AT5G16770 76.812 5.02e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele55g0390 Myb_DNA-binding 8.8e-17 CL0123