Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0389 ATGGGTAGGCCACCGTGTTGTGAGGAGACTGGTATGAAGAAAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTTATCGCTTTTATTAGTAAACATGGCAGTGGAAGTTGGAGAACAGTTCCAAAGCACGCAGGCCTCAACAGATGCGGTAAAAGTTGCAGGCTACGGTGGAACAATTATCTTAAGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGAAATTGATCATCAACCTTCATTCTGTTCTTGGCAACAAGTGGTCGAAGATTGCAACGCATCTTCCGGGGAGGACTGATAATGAGATTAAGAATTTCTGGAACACCAGTATAAGGAAGAAGCTTCTGCAGATGGGTATTGACCCAGAAACTCACAAGCCAAGAGTTGACTTGAAGCATCTCTTGAATCTCTCGCTGTTGCTTGGCATGCCTAATAATAATAACTTGATGAGCCATGCTGGTCTGCAGGGTTTACTGCAACCAGATTTGAGTCATCAGTTAGCTCAAATCCAACTTCTGCAGAACCTGTTGCAGCTTATGAATGCCAATTCATCGATGCAGAGTAATTTCCCACTCTTGGGAAATTACAGTTTGATCAATAACCCAATAATGGAAGCAGGTATAAATGGTGCAAACAGTGCTCTCCTCAGCAACTTGAGAGAGCAAGAATTATATGCGAGCCCTGCTCTATTTCCTTCGGCACCAAGTGAATCACGCCAGGATGTTTCAGAATCATGGACAGACCAAGAAGGAGCATCATCAGATCAACAAGCTTTGGGTATTAATAATAGTATTAGCAGAGCTTCATCACAAGAAAAGAATATTCAAGCTGAAAATCCATTTCCTGCAACCAGTTCAGGCAACTTCAACCAGCAGTCACCTCCATCCACGGTCTTTGATCCTTGGGAAAAACTCTTGGAAGATGATGGTGCAAGTGATTCCTATTGGAAAGAACTTTTAGAGTAA 969 0.4314 MGRPPCCEETGMKKGPWTPEEDEKLIAFISKHGSGSWRTVPKHAGLNRCGKSCRLRWNNYLKPDIKRGKFTEEEEKLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTSIRKKLLQMGIDPETHKPRVDLKHLLNLSLLLGMPNNNNLMSHAGLQGLLQPDLSHQLAQIQLLQNLLQLMNANSSMQSNFPLLGNYSLINNPIMEAGINGANSALLSNLREQELYASPALFPSAPSESRQDVSESWTDQEGASSDQQALGINNSISRASSQEKNIQAENPFPATSSGNFNQQSPPSTVFDPWEKLLEDDGASDSYWKELLE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0389 322 CDD SANT 69 110 IPR001005 -
Lele55g0389 322 Gene3D - 12 67 - -
Lele55g0389 322 MobiDBLite consensus disorder prediction 232 302 - -
Lele55g0389 322 SMART sant 13 63 IPR001005 -
Lele55g0389 322 SMART sant 66 114 IPR001005 -
Lele55g0389 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele55g0389 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele55g0389 322 FunFam Transcription factor MYB39 69 130 - -
Lele55g0389 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele55g0389 322 MobiDBLite consensus disorder prediction 234 299 - -
Lele55g0389 322 PANTHER F14D16.11-RELATED 1 293 - -
Lele55g0389 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele55g0389 322 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele55g0389 322 Gene3D - 69 116 - -
Lele55g0389 322 CDD SANT 16 61 IPR001005 -
Lele55g0389 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
Lele55g0389 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele55g0389 322 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0389 Lele-ChrLele55 2423584 2424656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0389 1 322 MYB Transcription Factor Family AT5G16770 44.538 7.13e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele55g0389 Myb_DNA-binding 1.9e-18 CL0123