Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0375 ATGCTTTGCAATTGCGATTTATTTCTTGGAGAGCGACAGGGCAAGGTGGAAGGAAGAGTTTGTTTGCCCAAGGAAGCTAGAAACGTATTAGAATCTTTGAAGCGTAAAAGGCTTCACCGAGCAAAATCTTCGACTGCCAATAAGACAAGTGTTGCTAATATGATGACAAGAAGCGGAGGAGATGCTTTAAGGGCTTCGTCATCATGTGGTATGAGATTGCATGGTAATGCAGATGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACATGAGTGATCTAGAATGGACTGAAAAAATTCCCGAGTGTCCTGTGTACTCCCCAACAAAGGAGGAATTTGAGGACCCTTTGGTTTATTTGCAAAAGATAAGTCCTGTGGCTTCAAGATATGGTATATGCAAGATTATTTCTCCTTTGAGTGCTTCAGTTCCTGCTGGAGTCGTGTTAATGAAGGAGAAAGCAGGATTTAAGTTTGCAACTAGAGTACAGCCACTTCGCCTTGCTGAGTGGGATACTGAAGACAAGGTCACATTTTTCATGAGTGGAAGAAATTATACATTTCGCGATTTTGAAAAAATGGCGAACAAGGTGTTTGCACGTAGATATTGCAGTGCTGGATGTCTTCCTGCCTCATTTTTGGAAAAAGAGTTTTGGCATGAAATTAGCTGTGGAAAGATGGAAAGTGTAGAATATGCATGTGATGTAGATGGTAGTGCCTTTTCCTCTTCTCCCAATGATCAACTTGGGAGCAGCAAATGGAATTTGAAGAAGCTTTCTCGGCTGCCCAGATCCATCTTGCGGCTCTTGGAAACAGTAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTTGAGGATCACTACTTGTACAGTATTAATTATCATCACTGCGGGGCACCAAAAACTTGGTACGGAATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTAAGAGAACATGTGTATACTAATGATATTCTGTCAAGTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACTCTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTGCCGGTCTATAAAGCTGTTCAGAAACCGGGAGAGTTTATTGTTACCTTTCCTAGAGCGTATCATGCTGGTTTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAATTTTGCCATTGGTGATTGGTTTCCTTTAGGGGCCACCGCCAGCAGGCGATATGCACATCTAAATAGGGTTCCTCTGCTACCTCACGAAGAACTTTTATGCAAAGAAGCAATGCTCCTCTATACAAGTTTAGAACTTGAAGATTCAGATTTTCCTTCTGCAGACTCGATGTTTCATAATAGCATCAAGATCTCTTTTGCTAATTTGATGCGCTTCCAGCATTGTGCCCGCTGGGTGTTAGTTAAATCAGGGGTGTGCACAAATGTTTCTTCACACTCCCATGGCTCAATTCTCTGTAGTCTCTGCAAACGTGACTGCTATGTAGCATATGTTGACTGTGACTGTCATATGCATCCTGTGTGTCTTCGCCATGATATCGAATCTCTTGACTTCACCTGTGGGAGGAAACACACTCTTTACTTGAGGGAGGATATTGAAGATATGGAAGCTGCGTCCAAGAGGTTTGAGCAGGAAGATGGTATACTGGATGAGATAATTAAGCAGATCAAGGCTGACAGTAACATGTATTCATATCCCTTGTCAAATATGTTTCAGAGAGCTGAGGCCGATGGATATACCCCTCATTCCGAGATAAAATTTGATCCTGTTATTGAATCATCTGACTCAGGCTCAGATCAGTTAGTGAATATTCAAGAGTGTGCTATTCAAAGTCAATGGGCTTTGAGGCATTGCTCAGGATCAGAATATCATAAATCCGAAGTGTCTGATGTTTCCTTCATTTCTGCTGCTTCTGCTCTTTGCTCTCTTTCAGACCCTGTTGAGATTTATCCTTCTACTACTAAAAATGATGAGGGGAGTGCAAACTCAGGCATTGTTAATTCTGAAGAGCTTTGTGAAAGAGTGTCCAATAGTGTATGCGAATCTTTATTATCCCCTACACGGAATCAGGACGGCTCGATTAAACCTCAGGGTGGTGATCTTTATAGATTAAAGTCCATGGTGAATAATGAAAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAGCGGCCTTCTTCTTTGAAGGCAGAGAGGAGAAATGGGAATGATGGGATGTGTTCCAAGCATTCTGACCACCAGGGACTAAAACGGTTGAAGAAAAACTCTGTTGAAGGGAGAAGTGGGCAACTAATAGATTACAGCAAAAGCAGTGAATCAAGTTACAACAAGTGGAGGCACCCAGGAAATCAGAAAATTGATAGCGAAAGCTGTACGAGGGAAAGATATGCGAAGGTTAATAATGGCATTCCCATTTCCATAAGGTACAAGAAAGTAGGAAACGAGGACCAGAGTGGAGAAGGAGATCACAAGAAGAGAAATTGGTCGCAACAGAGTATAATGGAACCATCATCTGCCACAGAGATAGGGATCGGAGCGAAGAGGCTTAAAGTGCGAGGCCCTTCATTCCTGAGCTTATAG 2619 0.4223 MLCNCDLFLGERQGKVEGRVCLPKEARNVLESLKRKRLHRAKSSTANKTSVANMMTRSGGDALRASSSCGMRLHGNADAFSKRKVDKFDMSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKISPVASRYGICKIISPLSASVPAGVVLMKEKAGFKFATRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPASFLEKEFWHEISCGKMESVEYACDVDGSAFSSSPNDQLGSSKWNLKKLSRLPRSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAPKTWYGIPGHAALEFERVVREHVYTNDILSSEGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGATASRRYAHLNRVPLLPHEELLCKEAMLLYTSLELEDSDFPSADSMFHNSIKISFANLMRFQHCARWVLVKSGVCTNVSSHSHGSILCSLCKRDCYVAYVDCDCHMHPVCLRHDIESLDFTCGRKHTLYLREDIEDMEAASKRFEQEDGILDEIIKQIKADSNMYSYPLSNMFQRAEADGYTPHSEIKFDPVIESSDSGSDQLVNIQECAIQSQWALRHCSGSEYHKSEVSDVSFISAASALCSLSDPVEIYPSTTKNDEGSANSGIVNSEELCERVSNSVCESLLSPTRNQDGSIKPQGGDLYRLKSMVNNESDDSDSEIFRVKRPSSLKAERRNGNDGMCSKHSDHQGLKRLKKNSVEGRSGQLIDYSKSSESSYNKWRHPGNQKIDSESCTRERYAKVNNGIPISIRYKKVGNEDQSGEGDHKKRNWSQQSIMEPSSATEIGIGAKRLKVRGPSFLSL 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0375 872 FunFam Lysine-specific demethylase isoform A 97 446 - -
Lele55g0375 872 MobiDBLite consensus disorder prediction 741 770 - -
Lele55g0375 872 Pfam C5HC2 zinc finger 499 550 IPR004198 -
Lele55g0375 872 Pfam JmjC domain, hydroxylase 279 402 IPR003347 -
Lele55g0375 872 SUPERFAMILY Clavaminate synthase-like 180 435 - -
Lele55g0375 872 PANTHER LYSINE-SPECIFIC DEMETHYLASE 94 796 - -
Lele55g0375 872 MobiDBLite consensus disorder prediction 826 842 - -
Lele55g0375 872 Pfam jmjN domain 103 135 IPR003349 -
Lele55g0375 872 Gene3D Cupin 102 461 - -
Lele55g0375 872 SMART cupin_9 249 419 IPR003347 -
Lele55g0375 872 MobiDBLite consensus disorder prediction 824 853 - -
Lele55g0375 872 ProSiteProfiles JmjC domain profile. 249 419 IPR003347 -
Lele55g0375 872 ProSiteProfiles JmjN domain profile. 102 143 IPR003349 -
Lele55g0375 872 MobiDBLite consensus disorder prediction 741 776 - -
Lele55g0375 872 SMART JmjN_1 101 142 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0375 Lele-ChrLele55 2341501 2346022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0375 99 569 JUMONJI Transcription Factor Family AT2G34880 31.769 6.98e-66 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele55g0375 JmjC 1.9e-39 CL0029