Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0373 ATGGAGCTATTTCCAGCACAACCTGATTTGTCTTTGCAGATTAGTCCTCCGAACGCGAAGCCCACATCAGGATGGAGAAACAGTGGCACACATCATCATCATCATCAAGATCAGCTCGATTTGGGGTTCTGGAAGAGAGCTTTGGAAACCAGAAGCTCTTTGCTTTCTTCTTCTTCTTCTTCTTCTTCAATGCCTAAAACTCCTAACTTTTTCGACCTTTCACTCTCCAATATTTCTTCTTCTTCCATTAACCCAGCAGCTCCTACTACATTAACAACCTCTTCAATTTCTCCCTCCTCAGATCATATCAGCTGCCAAAACGCCCCGTTTCAGCACCCACAAGACCTGGGATTTCTCAGACCCATCCGAGGAATCCCCGTGTACCAGAACCTTCCTCATCCTCATCCAGCTGCAACTACCACTCTTCCTTCTTCTTTCTCTCAAGTTCGTCAGAATCTGCAGGATGCTTCTATTTCAGCCGCAGTGAACAGCAACACGACCACCACCGCTTTTCCTTTTCATCATCATCATCATCATCACCATAGTCAAGGTTTGATGAGGTCGAGGTTCTTGTCCCATCGCTTCCCTACCAAACGCAGCATGAGAGCTCCTAGGATGCGTTGGACTACCACCCTCCATGCTCGCTTTGTTCATGCTGTTGAGCTTTTGGGTGGCCACGAAAGGGCTACACCCAAATCCGTTCTCGAGCTAATGGATGTCAAGGATCTTACTTTAGCCCACGTTAAATCTCATTTACAGATGTATCGGACGGTGAAAACCACAGATAGAGCAGCAGCTTCTTCTACAGGGCAATCAGATGGGTATGATAATGGATCATCTGGGGATACTTCTGAAGAATTAATGTTTGACATGAACAAGCAGGGAAGACAAAGTGTTCATCAAGAAAAGGAATATCATCATGGCCTTTGGAGCAACTCTTCCAGAGAAGCTTGGTTGCACGGGAAGCCAAGGGAGATTGATTCTGTTGGAAACAACCATGTTGGTTCTCTTGAGAAAGAGAGAATATCAGATGGAAGCTCATCGTCAAACATTTCAGGATCAAGCACTAAGAAGCCTAATCTTGATTTGGAGTTCAGTTTGGGACAACCAATAATATGA 1119 0.4522 MELFPAQPDLSLQISPPNAKPTSGWRNSGTHHHHHQDQLDLGFWKRALETRSSLLSSSSSSSSMPKTPNFFDLSLSNISSSSINPAAPTTLTTSSISPSSDHISCQNAPFQHPQDLGFLRPIRGIPVYQNLPHPHPAATTTLPSSFSQVRQNLQDASISAAVNSNTTTTAFPFHHHHHHHHSQGLMRSRFLSHRFPTKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSTGQSDGYDNGSSGDTSEELMFDMNKQGRQSVHQEKEYHHGLWSNSSREAWLHGKPREIDSVGNNHVGSLEKERISDGSSSSNISGSSTKKPNLDLEFSLGQPII 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0373 372 Gene3D - 203 260 - -
Lele55g0373 372 FunFam Myb family transcription factor 202 260 - -
Lele55g0373 372 MobiDBLite consensus disorder prediction 261 285 - -
Lele55g0373 372 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Lele55g0373 372 MobiDBLite consensus disorder prediction 11 26 - -
Lele55g0373 372 MobiDBLite consensus disorder prediction 1 38 - -
Lele55g0373 372 Pfam Myb-like DNA-binding domain 205 256 IPR001005 -
Lele55g0373 372 MobiDBLite consensus disorder prediction 338 372 - -
Lele55g0373 372 MobiDBLite consensus disorder prediction 341 362 - -
Lele55g0373 372 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 370 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele55g0373 372 SUPERFAMILY Homeodomain-like 201 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0373 Lele-ChrLele55 2324401 2328317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0373 1 370 G2-like Transcription Factor Family AT4G17695 38.845 6.05e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele55g0373 Myb_DNA-binding 1.8e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1114 53 20221034 20225506 Lele55g0373 55 2324401 2328317 hybridization
Lele54g1082 54 16760473 16764410 Lele55g0373 55 2324401 2328317 hybridization