Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0352 ATGGGTAAGAAACAGCATGATGCTGCCAGAGTCAGCGAGCCAGTAGCCGAGGAAGCCCCCGACTACTCGGCAATCAAAGCAGAGAAGAAGAAAAAGAAGAAAGAAAAGCAAAACGAAGATAGTCCCAAAAGAAAGCTCGAGGAAGTTGAGGTCCAGGATAGCACAGAACCGAAATCGAAGAAGAGCAAGAAGGATAAGAAGTCGAAAAAAAGCGCGGAGGAAACCGTAACCGTCGAAACAAATGACGCCGAGAACGGTGGAGAGGACGACTCGGTGAGAGATGGGCACGTTGTGGTTACTGGAAAGAATATCAATGATGAGAAGTATGCGCCCACCAAGACTTTTTCCGAATCGGGGCTTCCAAAGGAAGTCTTGGATTGCTGCAAAAGTTTTGAAAAGCCGTCCCCTATTCAGTCCCGAGCGTGGCCTTTCTTATTGAATGGTCGTGATTTAATTGGCATAGCGGCTACTGGGTCAGGAAAAACATTAGCTTTTGGAATACCGGCTATGATGCATGTTATGAGCAAGCGCAAGAATAAAGCGTCAACGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCAACCAGGGAGCTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGAGTTCTTGTGGTGTGGAATCTATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATATCTTCGTTAAAATCTGGTGTTGACATTGTCATTGGAACTCCTGGTCGTATAAAGGATCTGATTGAAATGGGTGTTTGTTCTCTGAAAGAGGTTTCATTCGTGGTGCTTGATGAAGCAGATCGAATGCTTGACATGGGATTTGAACAAATAGTTCGCTCCATACTGGGTCAGACTTGTTCTGTTCGGCAAATGGTTATGTTCAGTGCGACATGGCCTCTACCAGTTCATAACTTAGCGCAAGAGTTTATGGATCCTAACCCTGTGAAAGTTGTTGTAGGATCAGAGGACTTAGCTGCCAATCATGATGTTATGCAGATAGTTGAGGTCTTGGACGATCGTGCACGAGATAAACGCCTGGTTGCTTTGCTAGAAAAGTACCACAAATCTCAGAGGAATAGGGTATTGGTTTTTGTCTTATACAAATTGGAAGCCACGCGAGTGGAAAAGATGCTTCATCAAGGGGGTTGGAAGGTTGTCTCTATACATGGGGACAAGGCACAATATGAACGTACGAAATCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCGGATGTCGAAGTTGTGATCAACTACAGTTTTCCTTTAACTACAGAAGATTATGTTCATAGAATCGGGAGGACAGGACGAGCCGGGAAGAAAGGTGTTTCGCATACGTTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTAGTGAATGTTTTAAGAGAAGCAAATCAAATTGTGCCTGACGATCTCTTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTGTACGGAGCTCACTTCAAGGAGATTCCTGCTGATGCTCCCAAGTCAAAGAAGATAACATTTGACGACTCTGGCGAAGATTAA 1596 0.4505 MGKKQHDAARVSEPVAEEAPDYSAIKAEKKKKKKEKQNEDSPKRKLEEVEVQDSTEPKSKKSKKDKKSKKSAEETVTVETNDAENGGEDDSVRDGHVVVTGKNINDEKYAPTKTFSESGLPKEVLDCCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVMSKRKNKASTGRNPLCLVLSPTRELAQQISDVMCDAGSSCGVESICLYGGTSKGPQISSLKSGVDIVIGTPGRIKDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHNLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLVALLEKYHKSQRNRVLVFVLYKLEATRVEKMLHQGGWKVVSIHGDKAQYERTKSLSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREANQIVPDDLLKFGTHVKKKESKLYGAHFKEIPADAPKSKKITFDDSGED 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0352 531 Pfam Helicase conserved C-terminal domain 347 456 IPR001650 -
Lele55g0352 531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 319 IPR014001 -
Lele55g0352 531 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 139 IPR014014 GO:0003724
Lele55g0352 531 Pfam DEAD/DEAH box helicase 136 305 IPR011545 GO:0003676|GO:0005524
Lele55g0352 531 CDD SF2_C_DEAD 333 465 - -
Lele55g0352 531 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 491 - -
Lele55g0352 531 Gene3D - 22 322 IPR027417 -
Lele55g0352 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 469 IPR027417 -
Lele55g0352 531 CDD DEADc 131 320 - -
Lele55g0352 531 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 265 273 IPR000629 -
Lele55g0352 531 MobiDBLite consensus disorder prediction 22 77 - -
Lele55g0352 531 FunFam ATP-dependent RNA helicase RhlB 322 499 - -
Lele55g0352 531 SMART helicmild6 375 456 IPR001650 -
Lele55g0352 531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 495 IPR001650 -
Lele55g0352 531 Gene3D - 323 498 IPR027417 -
Lele55g0352 531 MobiDBLite consensus disorder prediction 1 95 - -
Lele55g0352 531 SMART ultradead3 130 336 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0352 Lele-ChrLele55 2200221 2204519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0352 111 485 Eukaryotic Initiation Factors Gene Family AT3G19760 32.095 1.34e-54 187