Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0316 ATGTCTGAGAGGTCAAATCAAAGAAAGTGCATAGTCAACGTGTCTGTCTTGTCCACAAAGAAAACTCCGCAAAGTGAAAAATCCAAAAGCAACGCACAAAGAAGCCTTTTCTGCTTTCTAGGTTCAAGCAATCACCAAATCGAAATACTGCCTCAACGCTCTCTGCAAGTGCGAACCCTAATTCCAGCTTCTCTCCTAGATTCATACGACGTCTTTACGATGTTCGGAGGCGGAGAAGACGAGGCCTTGGCCCGCTTGGGCATCATGACGCCGTCCCTCCTCAAACCGGCGACGTCGTCGGTGATTTCCGGTGAGATGTCACCGTCGACGGCAGCTGCGCCTGTGAGGGACGAGAGGGTTCCAGCGCAGCCGCAGTGGAGCCAGCAGGAGACGAGGGAGTTCATAGCGATACGCGCGGAGCTGGAACGGGACTTCACTGCGTCTAAGCGAAATAAGACCCTCTGGGAGGTTGTCAGTAACAAGATGAGGGAGAGAGGCTTCAGAAGGAGTCCTGAACAGTGTAAATGCAAGTGGAAAAACCTTGTTAATCGTTATAAGGGGAAAGAGACATCAGATCCTGAGCATGGTAGACAGTGTCCCTTTTTTGAAGAATTACATGCCATCTTTGCTCAAAGAGCACAGAACATGAAGCGGTTACTTCTTGAATCTGAGGCCCGTTCAACTCAGACAAAGAAGGGGATGAAAAGGCTGAGCGGGGATCGATCCTCAGAGGAATTCTCAGAAGATGATGATGAGGTTGAAGATGACAGTGAAGAGGAAAGACCTGCAAGAAGCAACTCTCGCAAAAGGAAAGCAGACAAGGTTGCAATTGAGAAGTCTTCGAAGGCAAGTAATGCATCAGATGCTATCAATAATACTGCCAATAGCATTCAGGAAATGCTTAAGGAATTTTTCCAGCAGCAGCTGAGGATGGAGATGCAGTGGAGCGAGATGATGGAAAGGCGTGCTCATGAAAGACAGCGGTTTGAGTTGGAATGGAGGCAGTCAATGGAGAAGCTTGAGAGGGAGAGATTGATGATTGAGCAGGCATGGAGGGAGAGAGAGGAGCAGAGAAGAATAAGTGAAGAGAGCCGATCAGAGAGGAGAGATGTACTGTTGACGAACCTTTTGAACAAACTCATCCATGAATCTAATTAG 1158 0.4827 MSERSNQRKCIVNVSVLSTKKTPQSEKSKSNAQRSLFCFLGSSNHQIEILPQRSLQVRTLIPASLLDSYDVFTMFGGGEDEALARLGIMTPSLLKPATSSVISGEMSPSTAAAPVRDERVPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSNKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHGRQCPFFEELHAIFAQRAQNMKRLLLESEARSTQTKKGMKRLSGDRSSEEFSEDDDEVEDDSEEERPARSNSRKRKADKVAIEKSSKASNASDAINNTANSIQEMLKEFFQQQLRMEMQWSEMMERRAHERQRFELEWRQSMEKLERERLMIEQAWREREEQRRISEESRSERRDVLLTNLLNKLIHESN 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0316 385 ProSiteProfiles Myb-like domain profile. 126 182 IPR001005 -
Lele55g0316 385 CDD GT1 124 189 - -
Lele55g0316 385 FunFam Zinc finger and SCAN domain-containing 20 126 187 - -
Lele55g0316 385 MobiDBLite consensus disorder prediction 224 290 - -
Lele55g0316 385 Gene3D - 126 187 - -
Lele55g0316 385 MobiDBLite consensus disorder prediction 259 278 - -
Lele55g0316 385 Pfam Myb/SANT-like DNA-binding domain 124 208 IPR044822 -
Lele55g0316 385 SMART sant 122 184 IPR001005 -
Lele55g0316 385 MobiDBLite consensus disorder prediction 100 125 - -
Lele55g0316 385 MobiDBLite consensus disorder prediction 224 243 - -
Lele55g0316 385 MobiDBLite consensus disorder prediction 244 258 - -
Lele55g0316 385 PANTHER FI21293P1 118 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0316 Lele-ChrLele55 1947237 1948941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0316 107 385 Trihelix Transcription Factor Family AT2G38250 42.143 1.68e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele55g0316 Myb_DNA-bind_4 1.1e-22 CL0123