Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0306 ATGTTGTTTCAGTCCCGTTTGGTTTTGGGATATGGAAAACCATCTGAGACGAGAATAGAATTCAATTTTGCCGGTGGGGAATGGCCTTTTGTTGCCGTCACTGCAGTTTACTACTTGTTTCCTGTGGCGTTAAATACTTGTAGAAGCGTTGTTGCTTGGAGATTTCTGGAGGCATTGGTGCGAACATGGGATCCAGTAGTAGCAAAGCCACTCCCTCTTGCAGTTCGTCGTCATGTTCCGGCAGTTTTCGGAAGGTTCGATCTAAGAAAGGGCATAGAGGATTTCAGTCGTATTGTCTTGGAACAACCTCTGGATCTCATGACGAACGGTTACCTGGAAAGAGTAGGTAAGGTACATTGGGTTTCAATGCAGTTTGAGAAGTGGTGCTTCACAGATTCTGCTCTCAATTTTATCACATTGCTTTTACTGTTTTGCTCTGTTCTTGCATTGTATCGTAGAAGCTCTTTTCAGAATAAAGTAAATGGCCGTAGTGTCACATACAACTGTTGCACTGAAACACGCTCAAATGAGATGAAATCAAAGTCTTTTAGAGATGATAAAAAGAAAACATCTGATGACATGCCTTCTAACATTGAACTTAATGAGTGGGCTCAAACAAGCATCTCCAGTAACTCCTCCAGAACTCGTAGCCGATCTACTCGTACTTCTTCAACTGGTAGTCAATTTCTTTCTCGGTTTAGCCTTATTCCTGGTAATTTAAGCTTCAGACTTAGCAGAACCACCAGTTTAGGGTCATCAAGGTCTTGCCATGTTTCTTCTACAACAATGTCAATATTCAACAATGAAGATAATCTTAGTCTGCATCCAAGACCCACTGGCAGCTTGGTTAATAGAAATGAAACTCAACAATGTACTGACTTGTTTCCTCCTTCTTTTGGTAACCGAATGCCTATACAGCATTATGAAGATACTCATAATAGTTTATGTTCTAATTTTTCAGCATCAGATTCATCTGGCAACTTGCAGAATAATCCCTCAGTTTCTTCTATACATAATGTGGTTAGAGATGGAAATGCTTCATGCGAAGGGCTGGATATAAACTTGTTTTCTCCAAGAATTCATGCTGAGACTGAAAATGTTGAGGGTCGACAAAATGGAGCTCGAGAACCTGTTGAAAGGAATTTTCGGTATAGCCGGACTCTAAGTGTTGGGAGGCTTCGTAATAGAGTTCTTCGTCAATCAACTTCATCTGATGTCAGCTTTTGCCCCCAGCAACAAGAGAGAGAAGCAAGGGATACCAGAGAGGATAGAGAAAGACAAGCTGGGGAGGGAGATTCGAGAATATTACCATCTTCTTCTATGTCTGGTTATCCTCCATCCAGTATGTCTAACTCCTTATTCAACACCCAAGACTATGAGGTTGAGAATTTGCGGTCAAGAGAAGCTAGGTACCAAGATCTTCAGGAACACAGATCCAACTTCCTTGAACGGAGAAGAAGAATAAGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTATCTGGACATGACAGATCTTGTATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATTGGTAGTCGTGATCCAAGTTCGATTGATGATACTGGTACTAGAGCTAGCATATCAAGAATTGTAATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGCGGTTTTATCTTCTCGCCCTTCTGTGTCTTCCATTGGATCTGTTCCTGCGCCTAATGATGTTGTGGAGTCCTTGCCAGTCAGATTATACACAAACTTGCATAAACATCAAGAGGATGCTGCCCAGTGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGTGAGCTGCCTTGCCATCACCAATTTCATAGAACATGCGTGGACAAGTGGCTCAAGGAAATTCATAGCCCAAATCCCTGTCTTATTAAAGATTATTTACTGTCATTGCTCAATGTAACAAAAATATGGCAGAAATGGACTGAACTACTTTTGCTCTCTGTGCCTTCATCATCACTAGATGAAACTCAGAAAAGAGTTAGAGATGACGATGATGTGTTTTTTGAGAAGGAACATTCTAAACTTTTTCAAAAACCTACTCTGGGTTCTGAAAGCAATTACTGA 2145 0.4145 MLFQSRLVLGYGKPSETRIEFNFAGGEWPFVAVTAVYYLFPVALNTCRSVVAWRFLEALVRTWDPVVAKPLPLAVRRHVPAVFGRFDLRKGIEDFSRIVLEQPLDLMTNGYLERVGKVHWVSMQFEKWCFTDSALNFITLLLLFCSVLALYRRSSFQNKVNGRSVTYNCCTETRSNEMKSKSFRDDKKKTSDDMPSNIELNEWAQTSISSNSSRTRSRSTRTSSTGSQFLSRFSLIPGNLSFRLSRTTSLGSSRSCHVSSTTMSIFNNEDNLSLHPRPTGSLVNRNETQQCTDLFPPSFGNRMPIQHYEDTHNSLCSNFSASDSSGNLQNNPSVSSIHNVVRDGNASCEGLDINLFSPRIHAETENVEGRQNGAREPVERNFRYSRTLSVGRLRNRVLRQSTSSDVSFCPQQQEREARDTREDRERQAGEGDSRILPSSSMSGYPPSSMSNSLFNTQDYEVENLRSREARYQDLQEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDPSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSVSSIGSVPAPNDVVESLPVRLYTNLHKHQEDAAQCYICLVEYEDGDSMRELPCHHQFHRTCVDKWLKEIHSPNPCLIKDYLLSLLNVTKIWQKWTELLLLSVPSSSLDETQKRVRDDDDVFFEKEHSKLFQKPTLGSESNY 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0306 714 CDD mRING-H2-C3H2C2D_ZSWM2 607 648 - -
Lele55g0306 714 FunFam Putative RING zinc finger domain superfamily protein 577 653 - -
Lele55g0306 714 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 157 644 - -
Lele55g0306 714 ProSiteProfiles Zinc finger RING-type profile. 608 648 IPR001841 -
Lele55g0306 714 SUPERFAMILY RING/U-box 586 644 - -
Lele55g0306 714 SMART ring_2 608 651 IPR001841 -
Lele55g0306 714 MobiDBLite consensus disorder prediction 412 431 - -
Lele55g0306 714 Pfam Ring finger domain 607 644 IPR001841 -
Lele55g0306 714 MobiDBLite consensus disorder prediction 401 453 - -
Lele55g0306 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 571 650 IPR013083 -
Lele55g0306 714 MobiDBLite consensus disorder prediction 433 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0306 Lele-ChrLele55 1905237 1911150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0306 181 644 C3H Transcription Factor Family AT5G45290 46.570 3.71e-100 317