Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0278 ATGACTCGTATTCTCAAATCCGCCGACAACTCCACCTCCGTCGCTGCCGCTGCCACCATCGCCGCAGCTGCCCCGCCTCCTGAGGCCGTCGCTTTGGAATCAGACTTCGTTGTGATCCTCGCGTCTCTGCTTTGCGCTCTCATATGCACGGTCGCCCTCATAGCCGTCTGTCGCTGCACCTGGTTCCGTCGCGGTGGATCCGGAGCCGGCGGCGGAGCTCCGGGGAAGTCTCTGGCGAATAAAGGTCTGAAGAAGAAGGTGCTCCTATCCATGCCAAAATTCACTTACATTGACAGCAATTCCGAGAAGTGGTTGGCCACTTCGGAGTGCGCGATTTGCTTGGCCGAGTTCGCCGGAGCCGACGAGATCCGAGTTCTTCCGCAGTGCGGCCATGGCTTCCACGCGGCGTGCATAGACACTTGGCTTGGGTCACACTCTTCGTGCCCTTCGTGTCGGCAGATTCTTGCTCTGCCTCCGAGGTGCCGTAGGTGCGGCCTTTACCCGGAGGTTCGCGGTGGAGAAGCCACCAGAATTAGCGGAGGGGTACCGGAGCTCAAGTCCAGACTTGACGATAATGCCACTACTGCTAATAATGATTATGTTAATAGCTCGACTAGTGATCATCAAGGGCCCAGAAATAATACTGGATACCTACCATAA 660 0.5682 MTRILKSADNSTSVAAAATIAAAAPPPEAVALESDFVVILASLLCALICTVALIAVCRCTWFRRGGSGAGGGAPGKSLANKGLKKKVLLSMPKFTYIDSNSEKWLATSECAICLAEFAGADEIRVLPQCGHGFHAACIDTWLGSHSSCPSCRQILALPPRCRRCGLYPEVRGGEATRISGGVPELKSRLDDNATTANNDYVNSSTSDHQGPRNNTGYLP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0278 219 CDD RING-H2_PA-TM-RING 109 152 - -
Lele55g0278 219 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Lele55g0278 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 156 IPR013083 -
Lele55g0278 219 SUPERFAMILY RING/U-box 98 160 - -
Lele55g0278 219 Pfam Ring finger domain 109 152 IPR001841 -
Lele55g0278 219 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 24 165 - -
Lele55g0278 219 SMART ring_2 110 151 IPR001841 -
Lele55g0278 219 MobiDBLite consensus disorder prediction 194 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0278 Lele-ChrLele55 1683843 1684502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0278 31 164 C3H Transcription Factor Family AT1G20823 62.500 2.39e-54 171