LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g0260	ATGAAGCGCGATTTCTACGAAATTTCCGACGATGAATGGGATAACCATTCCTTTAAGCCCTCTCGAGTTCTAAAGAAAACACAGACCCCCGCCCCGCCTCCGATCGAGTCCTTTGCTTTTCGGCCTGGTAAGCATGAGAATTCGGACCAAAGTAGCGATGATTGCGTCCAAGTGAAAGAAAATTTGGAGGATGAGGATGCGGAGCTGGAGGGAGGTAAGTCTGGTGTAGGGGCAAATCGTGGCCGTCGGTTCGTTGTCGACGACGAGGAGAGCGATAGGGATGTTGCGGAAGTGTATGAAATAGAGTCAACGGATGATGATGAAGTAGAAGAGGAGGAAGCGGATGAAAACGATGTAGTGGGGAGGGCTTTGTACAAGTGTGCAAAAATATCTGCAGAATTGAAAAAAGAGCTATATGGATCATCGGGGACTGCTTGCGATCGGTATTCCGAGGCAGAATCTTCTTCAGTGAGAATTGTAAACCAGGATGATATTGATGTGGCTTGCGGGTCTGAGGATTCTGATTTTCAGCCTATCCTCAAGTCATATCAGCTGGTTGGTGTCAATTTTTTGCTTTTGTTGTATCGGAAGGGCATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACAGTTCAGGCCATCACATATCTAACCTTGTTGAAACACCTGCAAAATGATCCTGGTCCACATCTTATAGTGTGTCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAGATGAAAAGGTGGTGCCCATCCTTTTCTGTTCTACAATACCATGGCTCTGGACGAGCAACATACTTCAATGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCATTTAATGTTCTTCTTGTCTGCTATTCACTTTTTGAGCGGCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTGATGGATGAGGCACATGCTTTGAAGGATAAGAATAGCTATAGGTGGAAGAATCTAATGTCTGTTGCACGCAATGCTAACCAGCGTTTGATGCTGACAGGGACACCCCTTCAAAATGATCTACATGAATTATGGTCATTGTTGGAGTTTATGATGCCAGATATTTTTGCTACAGAAGATGTTGACTTAAAAAAGTTACTGAACACCGAAGACGGAGATTTAGTTGGTCGCATGAAGTCCATCTTGGGGCCATTTATTTTACGGCGACTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATTCAACGAGTTGAATATGTTGTAATGGAAGTGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTATTTCACAAGCTCGAATAGCAAAATGTTTGGGGCCTAGCTCTAACAATATTCTTGAAGTTCTTCCTCGTCGACAAATTAACAATTATTTTGTTCAGTTTCGCAAGATTGCAAACCATCCCTTGTTGATTAGGCAAATCTATAGCGATGAGGATGTTATTCGCTTTGCCAGGAAGTTACATCCAGTGGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATTGAGGAACTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGCGTCCTTCCAGATAGAAGTGTTATGTCTTCTGCAAAATGTCGGGCCTTAGCAGACTTTCTTCCTTCACTTCAAAAAGGTGGTCATCGTGTTTTAATATTTAGTCAATGGACGTCTATGCTTGACATATTGGAGTGGACACTTGATGTCATTGGATTGACCTACAGACGGCTTGATGGAAGTACGCAGGTAACAGAGAGGCAAACAATAGTTGATACGTTCAATAATGATACTTCTATATTTGCTTGCTTGCTTTCTACAAGAGCTGGAGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAACCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATAGGATAGGTCAAACGAAGCCCGTAACTATATATCGGCTGGTGACCAAGGGTACAGTTGACGAAAATGTATATGAGATTGCAAAAAGAAAGCTTGTATTGGATGCTGCGGTCCTTGAATCTGGCATGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTTTATTGGGTTAA	2193	0.4264	MKRDFYEISDDEWDNHSFKPSRVLKKTQTPAPPPIESFAFRPGKHENSDQSSDDCVQVKENLEDEDAELEGGKSGVGANRGRRFVVDDEESDRDVAEVYEIESTDDDEVEEEEADENDVVGRALYKCAKISAELKKELYGSSGTACDRYSEAESSSVRIVNQDDIDVACGSEDSDFQPILKSYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLQNDPGPHLIVCPASVLENWEREMKRWCPSFSVLQYHGSGRATYFNELSYLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNTEDGDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEVQQENAYKEAIEEYRAISQARIAKCLGPSSNNILEVLPRRQINNYFVQFRKIANHPLLIRQIYSDEDVIRFARKLHPVGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGVLPDRSVMSSAKCRALADFLPSLQKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSAILLG	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g0260	730	PANTHER	SNF2/RAD54 HELICASE FAMILY	60	708	-	-
	Lele55g0260	730	Pfam	SNF2-related domain	200	486	IPR000330	GO:0005524\|GO:0140658
	Lele55g0260	730	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	312	709	IPR027417	-
	Lele55g0260	730	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	193	371	IPR014001	-
	Lele55g0260	730	CDD	DEXHc_Snf	180	373	-	-
	Lele55g0260	730	FunFam	Protein CHROMATIN REMODELING 19 isoform A	151	429	-	-
	Lele55g0260	730	Gene3D	-	416	492	IPR027417	-
	Lele55g0260	730	SMART	helicmild6	585	668	IPR001650	-
	Lele55g0260	730	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	406	IPR027417	-
	Lele55g0260	730	CDD	SF2_C_SNF	546	679	-	-
	Lele55g0260	730	Gene3D	-	179	415	IPR038718	-
	Lele55g0260	730	MobiDBLite	consensus disorder prediction	1	91	-	-
	Lele55g0260	730	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	559	721	IPR001650	-
	Lele55g0260	730	Gene3D	-	541	725	IPR027417	-
	Lele55g0260	730	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lele55g0260	730	Pfam	Helicase conserved C-terminal domain	556	668	IPR001650	-
	Lele55g0260	730	SMART	ultradead3	176	381	IPR014001	-
	Lele55g0260	730	MobiDBLite	consensus disorder prediction	42	58	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g0260	Lele-ChrLele55	1587100	1592667	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g0260	201	695	RAD5 or RAD16-like Gene Family	AT5G22750	27.787	5.75e-47	178

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lele55g0260		SNF2_N	1.1e-52	CL0023