Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0258 ATGAACCATATCAGTGAAAAAAAGGGAAGCGAATGCGAGTATCGCCATAGTGAATATGCTCGGGTTAATCCCCGAGATTGTTGGTATTGGTTGAACGGTAATTGCTTGAATCCCAAATGTTCCTTCCGTCATCCGCCTCTTGATAGCTTCTTATCACCACAGTCAGCCAGTGCTGGTGGATCATCTGCTCCCCCATCACAGAGTTCTGGTGGATCATCTGCACCCCTGTCACAGAGTGCACCGACTTCTGTACCACATGCACCTTATAATTCTACAAAGCAAGCTGTCCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGACCGATGTGCTTTTTTGCATGGACCAAATCCTAGCACCAGTAATAAAGTTCCCCAGGTTCAGGCAACTAACCAGGTTACTGAGCCTCCAAGTTTTAAGAAGGTTTTTAGTGGCCCAGAAAAGTCAACACAAGAAAGGAAAATTTCCCGAGCAAACATTGCAAAGCCAGGTGCAAGCGCTGAAGCTAAGCCTGCTCAAAATGTTGAAACTGCTTCGCATCGAAATGTAGTTGCTGTAGAGAGGCATGCACCACCAGCAATGGGATTTGATAATGAGGCCTCTAGATTCAACGTAGTAAATACTCAGCCTATCACCAATGGAACCACTGCCCGGTCAAGCCATGTGTATCAATCTCATGGATCAGATGATCATAGTTTCCACAATGGCAAGGAAAGTGATGAATTCTTGAGAGAATCCTCACCTGGCTTTGATGTGCTTGTGGCTGATGAACTGAGGAATTCAGATTACTATGATAGAGAGGACCAATTTGGAAAAGCAAGAGGTCAAGACGGGATGAACTTGGACTCTGTGAATGAATATGATTTAGGACATTCTGTAGATTATAAATCTGTAGCAGATATTGACCAAGAAAGATATTGTGCGCCACACGGCTATGACTCGTACGATCACATGCAAGAGACATATGCATGGGACCAGCGCAAGAATTCATCTGAAAGAATATTCCGGGGAACTACCCATTTGGAAAGGGTGACTCATCACAGATCTGGCAGTCCTGAAAATGTTGGGGTTTCAGATCTTCGACATTGTTTATCTAAGCGCATGAGGGTCAATGGTTTGAAATCTGTTGTGAGTTATGATTATGCGCGCCAGAGCCCTGAGGATGAGCAAAGTCACCGATTTTCTTCTCAAAAGGATGCTCACCAGTTACCTCTGAATGAAAGCACTCTCAGCAATCGCTTCCGAGGCAGGATAAAGCTTCCGGCAAATGGTGTTGATGAATATGCGGAGAGGGAATCAGACAGGGGAAGAAATAGAAGCACATTTTCACCTGGAACTATGCAGGCTCCTCACCCAGGTAGGTTCCGAGATAGATTGAGAGGAAGGATGCAAGAAGATTTTGAGAGGAAAAACTTCAGGGATCGACCTATAATGAGAGAAGTAAATGGGGACCAAGACGCTGATTTTGATGGACCAAAAAGTCTTGCTGAACTGCGAAATGGAAAGAACAAGGAGCATCCGTTGCTTGGGAAGAGGAAAAGCTTAAAGGAACGGCAACAATCTGAGGATGATTTCATGTTTGAAGGTCCAAAACCTCTTAGTGAGATTTTAAAGGAGAAGAGAGCAACTGGAGTTGAAATAGGTTCCAAGAGTGGCAAATCGTCTGAGAATAAAGGAGACAATAAAGACAGAGAAGTTACTAATGGCTCGGAATACACCTCTGTCACAGGCGCACAAGAAGGCACTTTGCCTACAAATAAGGAAGATGTTAAGAACCAGGAATTGGAGGACACGGTTGAAAGAGATGCAGAAAGGACTGATGTAACTCATTACCGATCATTTGAAGAAGGAATGATGGACAACGAAGTAATAGAGCAGGAGTATGAAGGTGATGATCAGAAGGATGGTGATTATTACTATGAGCAAGGTGACGAGGGAGACTACAACTATGATGGAGGTGAAAATGCAGAGCAGGAAGAATACATGGATGATGAGGAGGATGGGGATGACTTTGCTAAGAAGATCGGTGTCATGCTCACATGA 2049 0.4417 MNHISEKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDSFLSPQSASAGGSSAPPSQSSGGSSAPLSQSAPTSVPHAPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPSTSNKVPQVQATNQVTEPPSFKKVFSGPEKSTQERKISRANIAKPGASAEAKPAQNVETASHRNVVAVERHAPPAMGFDNEASRFNVVNTQPITNGTTARSSHVYQSHGSDDHSFHNGKESDEFLRESSPGFDVLVADELRNSDYYDREDQFGKARGQDGMNLDSVNEYDLGHSVDYKSVADIDQERYCAPHGYDSYDHMQETYAWDQRKNSSERIFRGTTHLERVTHHRSGSPENVGVSDLRHCLSKRMRVNGLKSVVSYDYARQSPEDEQSHRFSSQKDAHQLPLNESTLSNRFRGRIKLPANGVDEYAERESDRGRNRSTFSPGTMQAPHPGRFRDRLRGRMQEDFERKNFRDRPIMREVNGDQDADFDGPKSLAELRNGKNKEHPLLGKRKSLKERQQSEDDFMFEGPKPLSEILKEKRATGVEIGSKSGKSSENKGDNKDREVTNGSEYTSVTGAQEGTLPTNKEDVKNQELEDTVERDAERTDVTHYRSFEEGMMDNEVIEQEYEGDDQKDGDYYYEQGDEGDYNYDGGENAEQEEYMDDEEDGDDFAKKIGVMLT 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0258 682 MobiDBLite consensus disorder prediction 213 244 - -
Lele55g0258 682 MobiDBLite consensus disorder prediction 52 88 - -
Lele55g0258 682 MobiDBLite consensus disorder prediction 570 588 - -
Lele55g0258 682 MobiDBLite consensus disorder prediction 475 548 - -
Lele55g0258 682 MobiDBLite consensus disorder prediction 555 569 - -
Lele55g0258 682 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 118 IPR000571 GO:0046872
Lele55g0258 682 Pfam RNA-binding, Nab2-type zinc finger 26 45 - -
Lele55g0258 682 Gene3D - 85 142 - -
Lele55g0258 682 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Lele55g0258 682 MobiDBLite consensus disorder prediction 475 670 - -
Lele55g0258 682 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Lele55g0258 682 SMART c3hfinal6 23 46 IPR000571 GO:0046872
Lele55g0258 682 MobiDBLite consensus disorder prediction 226 244 - -
Lele55g0258 682 MobiDBLite consensus disorder prediction 644 669 - -
Lele55g0258 682 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 7 680 - -
Lele55g0258 682 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Lele55g0258 682 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Lele55g0258 682 MobiDBLite consensus disorder prediction 384 412 - -
Lele55g0258 682 MobiDBLite consensus disorder prediction 427 457 - -
Lele55g0258 682 Gene3D - 7 56 - -
Lele55g0258 682 MobiDBLite consensus disorder prediction 589 621 - -
Lele55g0258 682 MobiDBLite consensus disorder prediction 160 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0258 Lele-ChrLele55 1563694 1565960 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele55g0258 zf-CCCH_2 0.0011 CL0537